RetrogeneDB ID: retro_mluc_1735

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429896:1395566..1396807(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000027936
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: CCT5
• Ensembl ID: ENSMLUG00000007977
• Aliases: None
• Description: None

Sequence

>retro_mluc_1735
ATTCACTCCATCAGGATCGCTGATGGCTATGAGCAAGCCGCCCGCATTGCTATCGACTACCTGGACGAGATCAGCGATAG
TGTCCTTGTTGACGTGAAGTACACTGAGCCCCTGATTCAGACTGCGGAAGCCACGCTGGGTTCCAAAGTGGTTAACAGCT
GTCACCGACAAATGGCTGAGATGGCCGTGAATGCTATTCTCACTGTGGCCGATATGCAGCGCAGAGACGTTGACTTTGAG
CTCATCAAAGTAGAAGGCAAAGTGGGCGGGAGATTGGAGGACACTAAACTTATAAGGGCGTGATTGTGGACAAGGATTTC
AGTCACCCACAGATGCCAAAACAAGTACAAGATGCTAAGATCGCAATTCTCACATGTCCATTTGAACCACCAAAACCAAA
GACGAAGCATAAGCTGGATGTGACCTCTGTGGAAGACTATAAAGCCCTTCAGAAATACGAAAAGGAGAAGTTTGAAGAGA
TGATTAAGCAAATTAAAGAAACTGGCGCTAACCTAGCTATTTGCCAATGGGGCTTTGATGATGAAACGAATCATTTACTT
CTTCAGAACGACTTGCCTGCGGTTCGTTGGGTTGGAGGACCTGAAATCGAGTTGATTGCCATTGCAACAGGAGGGCGGAT
CGTCCCCCGCTTCTCAGAGCTCACAGCTGAGAAGCTGGGCTTTGCTGGGATTGTAAAAGAGATCTCATTTGGGACAACTA
AAGACAAGATGCTGGTCATCGAGCAGTGTAAGAACTCCAGAGCTGTAACCATTTTCATCAGAGGAGGAAATAAATGATCA
TCGAGGAAGCAAAGCCATCCCTTCACTATGCCTTGTGTGTCATCCGGAACCTCATCCGTGATAATCGTGTGGTGTATGGT
GGAGGCGCTGCTGAAATCGCTTGTGCTTTGGCAGTTAGCGAAGCAGCAGATAAGTGTCCAACCTTGGAGCAGTATGCCAT
GCGAGCATTCGCTGATGCCCCGGAAGTCATCCCCATGGCCCTTGCTGAGAACAGTGGCATGAATCCCATCCAGACGATGT
CTGAGGTCCGAGCCAGACAAGTGAAGGATAAGAACCCTGCTCTTGGGATTGACTGTATTTCACAAGGGTACAAACGATAT
GAAGCAACAACATGTCATAGAAACCTTGATTGGCAAAAAGCAACAGATCTCTTTTGCAACACAAATGGTTAGAATGATTT
TGAAGATTGATGATATCCGAAAGCGTGGAGAATCTGAAGAA

Alignment

ORF - retro_mluc_1735 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 94.96 %
• Parental protein coverage: 76.52 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  IHPIRIADGYEQAARIAIDYLDEISDSVLVDVQYTEPLIQTAKTTLGSKVVNSCHRQMAEIAVDAILTVA
          IH.IRIADGYEQAARIAIDYLDEISDSVLVDV.YTEPLIQTA..TLGSKVVNSCHRQMAE.AV.AILTVA
Retrocopy IHSIRIADGYEQAARIAIDYLDEISDSVLVDVKYTEPLIQTAEATLGSKVVNSCHRQMAEMAVNAILTVA

Parental  DMQRRDVDFELIKVEGKVGGRLEDTKLI-KGVIVDKDFSHPQMPKEVQDARIAILTCPFEPPKPKTKHKL
          DMQRRDVDFELIKVEGKVGGRLEDTKLI.KGVIVDKDFSHPQMPK.VQDA.IAILTCPFEPPKPKTKHKL
Retrocopy DMQRRDVDFELIKVEGKVGGRLEDTKLI<KGVIVDKDFSHPQMPKQVQDAKIAILTCPFEPPKPKTKHKL

Parental  DVTSVEDYKALQKYEKDKFEEMIKQIKETGANLAICQWGFDDEANHLLLQNDLPAVRWVGGPEIELIAIA
          DVTSVEDYKALQKYEK.KFEEMIKQIKETGANLAICQWGFDDE.NHLLLQNDLPAVRWVGGPEIELIAIA
Retrocopy DVTSVEDYKALQKYEKEKFEEMIKQIKETGANLAICQWGFDDETNHLLLQNDLPAVRWVGGPEIELIAIA

Parental  TGGRIVPRFSELTAEKLGFAGIVKEISFGTTKDKMLVIEQCKNSRAVTIFIRGGNK-MIIEEAKRSLHDA
          TGGRIVPRFSELTAEKLGFAGIVKEISFGTTKDKMLVIEQCKNSRAVTIFIRGGNK.MIIEEAK.SLH.A
Retrocopy TGGRIVPRFSELTAEKLGFAGIVKEISFGTTKDKMLVIEQCKNSRAVTIFIRGGNK<MIIEEAKPSLHYA

Parental  LCVIRNLIRDNRVVYGGGAAEIACALAVSQAADKCPTLEQYAMRAFADALEVIPMALAENSGMNPIQTMS
          LCVIRNLIRDNRVVYGGGAAEIACALAVS.AADKCPTLEQYAMRAFADA.EVIPMALAENSGMNPIQTMS
Retrocopy LCVIRNLIRDNRVVYGGGAAEIACALAVSEAADKCPTLEQYAMRAFADAPEVIPMALAENSGMNPIQTMS

Parental  EVRARQVKDRNPALGIDCM-HKGTNDMKQQHVIETLIGKKQQISLATQMVRMILKIDDIRKPGESEE
          EVRARQVKD.NPALGIDC..HKGTNDMKQQHVIETLIGKKQQIS.ATQMVRMILKIDDIRK.GESEE
Retrocopy EVRARQVKDKNPALGIDCI>HKGTNDMKQQHVIETLIGKKQQISFATQMVRMILKIDDIRKRGESEE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1735 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000017889	1 retrocopy	retro_btau_1432,
Callithrix jacchus	ENSCJAG00000008977	1 retrocopy	retro_cjac_516,
Gorilla gorilla	ENSGGOG00000024064	1 retrocopy	retro_ggor_2197,
Myotis lucifugus	ENSMLUG00000007977	1 retrocopy	retro_mluc_1735 ,
Monodelphis domestica	ENSMODG00000002356	1 retrocopy	retro_mdom_861,