RetrogeneDB ID: retro_mluc_1790

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429909:540992..541692(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000000548
• Aliases: None
• Description: None

Sequence

>retro_mluc_1790
GAGGGAGCAGAGTGGAGGCCCTTGGCACCCAAGGAGATGGAGGGGGTGGTGAGCATCATACACCGTAAGTTCAGGCCATC
CAGATGCAGCTCAGGCAGAGCACCTGCGAGGCCGTCATGATCCTTCGCTCCCGGTTCCTGGGTGCCAGATGGCAGCGCGG
GAACTTCAGCAAACAGGCCACCGAGGTCCTACATGAGTATTTCTATTCCCACCTGAGTAACCCGTATCCCAGTGAGGAGG
CCTAGGAGGAGCTCGCCAAGAAGTGTGGCATCACCTTCTCTCAACTCTCCAACTGGTTTGGCAACAAGCGGATTCTCCAT
AAGAAAAATATCAGAAAGTTTCAAGAGGAGGGAAACATCAATGCCATCAAGACCGCGGTGTCTGTCACCCAGCGGGGCCA
CAGCCGCACCAGCTCCCGGCACCCCCTTCCTCCGCAGGCTCTGGCGGCTCTTTCAATCTTTCAGGATCCAGAGACATGTT
TCTGGGGATGCCCGGGCTCAGTGGAGATTCCTGCCCTGCTTCCCAGGTGGAATCACTCCGACACTCGATGGGCCCAGGGG
CCACGGAGATAACCTCGGGGAGGACAGATGGACAGCCCTCGGGAAATGAGGGCAAATGGCGCTGGCAGGAGGCTGTGACC
CCGTCCTCAGTGACGTCCCCAACAGAAGGACCAGGGAGCGTTCATTCTGACACTTCCCAC

Alignment

ORF - retro_mluc_1790 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 84.17 %
• Parental protein coverage: 54.65 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 5

Retrocopy - Parental Gene Alignment:

Parental  EQSRTRPVAPKEMERMVSIIHRKF-SAIQMQLKQSTCEAVMILRSRFLDARRKRRNFSKQATEVLNEYFY
          E....RP.APKEME..VSIIHRKF..AIQMQL.QSTCEAVMILRSRFL.AR..R.NFSKQATEVL.EYFY
Retrocopy EGAEWRPLAPKEMEGVVSIIHRKF<QAIQMQLRQSTCEAVMILRSRFLGARWQRGNFSKQATEVLHEYFY

Parental  SHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKFQEEANIYAVKTAVSVTQGGHSRTSS
          SHLSNPYPSEEA.EELAKKCGIT.SQ.SNWFGNKRI..KKNI.KFQEE.NI.A.KTAVSVTQ.GHSRTSS
Retrocopy SHLSNPYPSEEA*EELAKKCGITFSQLSNWFGNKRILHKKNIRKFQEEGNINAIKTAVSVTQRGHSRTSS

Parental  -PTPPSSAGSGGSFNLSGSGDMFLGMPGLNGDSYPASQVESLRHSMGPG-GYGDSLG-GGQMYSPREMRA
          .P.PPSSAGSGGSFNLSGS.DMFLGMPGL.GDS.PASQVESLRHSMGPG.G.GD.LG.GGQM.SPREMRA
Retrocopy <PAPPSSAGSGGSFNLSGSRDMFLGMPGLSGDSCPASQVESLRHSMGPG<GHGDNLG<GGQMDSPREMRA

Parental  NGG-WQEAVTPSSVTSPTEGPGSVHSDTSN
          NG..WQEAVTPSSVTSPTEGPGSVHSDTS.
Retrocopy NGA<WQEAVTPSSVTSPTEGPGSVHSDTSH

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1790 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000000548	3 retrocopies	retro_mluc_1220, retro_mluc_1790 , retro_mluc_981,
Otolemur garnettii	ENSOGAG00000016303	1 retrocopy	retro_ogar_2252,
Tursiops truncatus	ENSTTRG00000013787	1 retrocopy	retro_ttru_1118,