RetrogeneDB ID: retro_mluc_1838

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429926:1014723..1015275(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: EFTUD1
• Ensembl ID: ENSMLUG00000001470
• Aliases: None
• Description: None

Sequence

>retro_mluc_1838
ACTGCCAAGTCCACACCTGTCCTCATCTACCCAGGCAAAGAGGGATAGCTGATTAATCTCAAAGCCTCTTCAGGATATGT
AGATTTTACCTCTTGACGTATAAACTGCTGGATGCATCTGTCATGGGTACATCACGGTGATAGATGTGATGGAAGGAGTC
CATCTGCAGATACAGGCAGTTCTGTGACAATTCTGGATGAAAAATACCTGTCTAGTTTTAGTAATTAGTAAGAAAGATCG
CTTGAGAGTGGAAGTGAAGTTCACTCCACAAAAGGCCTATTCTCACCTCAAGCATATTTCAGCAGAGATTAAGGCACTCA
CAGGAACTATTTCACTTCTACAGTCTGAGGAGAAAGAGTAGAGAACGGGACTAAATTGCAAGTGAATCCAAATTCTGAAC
AAGGAGGGTGAACATTTGAGTGGAGCACTGGCTGGGAGGATACAGATGATTCTCAGTTTTACTTCTCTCCAGAGCAAAGA
AATGTGGTGTTTCCCAGTGCAATGGATGGGTGGGACTTCGGAATTGAGCTCTTTGACAAAATCTAGTCAAAA

Alignment

ORF - retro_mluc_1838 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 54.79 %
• Parental protein coverage: 73.71 %
• Number of stop codons detected: 6
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  TMKSSAISLHYAQGGEEYLINLIDSPGHVDFSS-EVSTAVRICDGCIIVVDAVEGVCPQTQAVLRQAWLE
          T.KS.........G.E..LINL..S.G.VDF.S..V.TA..IC.G.I.V.D..EGV..Q.QAVL.Q.W..
Retrocopy TAKSTPVLIY--PGKEG*LINLKASSGYVDFTS>DV*TAGCICHGYITVIDVMEGVHLQIQAVL*QFWMK

Parental  NIRPVLVINKIDRLIVELKFTPQEAYSHLKNILEQINALTGTL-FTSKVLEERAERESESPGTPGSDPEQ
          N...VLVI.K.DRL.VE.KFTPQ.AYSHLK.I...I.ALTGT..FTS.V..ER.E........P.S....
Retrocopy NTCLVLVISKKDRLRVEVKFTPQKAYSHLKHISAEIKALTGTI<FTSTV*GERVENGTKLQVNPNSEQGG

Parental  -VYDWSTGLEDTDDSHLYFSPDQGNVVFASAIDGWGFGIEHFAQIYSQ
          ....WSTG.EDTDDS..YFSP.Q.NVVF.SA.DGW.FGIE.F..I.S.
Retrocopy *TFEWSTGWEDTDDSQFYFSPEQRNVVFPSAMDGWDFGIELFDKI*SK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1838 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000001470	1 retrocopy	retro_mluc_1838 ,
Procavia capensis	ENSPCAG00000011842	1 retrocopy	retro_pcap_359,