RetrogeneDB ID:

retro_pcap_359

Retrocopy
location
Organism:Hyrax (Procavia capensis)
Coordinates:scaffold_4846:3695..3917(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSPCAG00000011842
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_pcap_359
ATGGTGCTCAACAGTTAGGATAAGATTATTCAACTCCAGACAACCACTGCAGGCATCAGGAATATTTGTGTTTTGGCTCA
TGTTGGCCATGGAAAAACTACCTTGGCTAACTGTCTAGCAGTGGAATCATCTCTACACGTGGCAGGCAAGTTAAGGTACA
TGGAGAGCAGACAAGATGAACGGATTCAAGGAATCACTATGAAATCCACTGACATTTCACTG

ORF - retro_pcap_359 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 67.53 %
Parental protein coverage: 58.46 %
Number of stop codons detected: 1
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMVLNSLDKMIQLQKNTANIRNICVLAHVDHGKTTLADCLISSNGIISSRLAGKF-YMDSREDEQIRGITM
MVLNS.DK.IQLQ..TA.IRNICVLAHV.HGKTTLA.CL.......S...AGK..YM.SR.DE.I.GITM
RetrocopyMVLNS*DKIIQLQTTTAGIRNICVLAHVGHGKTTLANCLAVES---SLHVAGKLRYMESRQDERIQGITM
ParentalKSSAISL
KS..ISL
RetrocopyKSTDISL

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Procavia capensis was not studied using RNA-Seq expression data.
Procavia capensis was not studied using ChIP-Seq data.
Procavia capensis was not studied using EST data.
Procavia capensis was not studied using FANTOM5 data.
retro_pcap_359 was not experimentally validated.

Retrocopy orthology:
Procavia capensis does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species Parental gene accession Retrocopies number
Myotis lucifugus ENSMLUG000000014701 retrocopy
Procavia capensis ENSPCAG00000011842 1 retrocopy
retro_pcap_359 ,



Copyright © RetrogeneDB 2014-2017