RetrogeneDB ID: retro_mluc_1937

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429957:999731..1000321(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: SGCG
• Ensembl ID: ENSMLUG00000006305
• Aliases: None
• Description: None

Sequence

>retro_mluc_1937
ATGGTATGTGAACTGTACACTACAACCATGGAAGGCACCACATAGAGAGAGAGGCCAGAGGACCAGTAAGTCTACAAAAT
TCTCATTTATGGCTGGAGAAAGCACTGCCTCTACATATTTGTTCTTCTTTTGCTCCTCGTTCTCCTTGAGAATTTTGCTC
CTATGATGTGGGTTCTTAAAGAGATGTTATTTCCCCCAACAGGAATGGATCACTTGCTTGTTACAAAAGATGGGCTTTGC
CTGGAAGAGGAGTCAGAATTTTTATTCCTATTATTGTATGCCAAAGGAATACACTCCAGAGTGGACTCATCCCTGCTTCT
ACAGTCTACTCAGAATGTGACCCTAAATACTCACAACTCTCAATGAGAGGTCACAGGCAGATTAAAAGTGGGTCCCCAAA
AGGTAGAAGTCCGGAGTCAACACTTTCCGACCAATTCCAAAGAAGGCAAGCCACTGTCCACTCTTGATGACAGCGAAGTT
GTGTTGGTACAGACAGACTTCAAGTAACTGGGCCTGAAGGGGCTCTTTTTGGACATTCAGTGGAGACACCCCTTGTAAGG
GCAGACCCACTTCCGGAGCTGAGATTGGAA

Alignment

ORF - retro_mluc_1937 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 72.73 %
• Parental protein coverage: 67.01 %
• Number of stop codons detected: 3
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MVREQYNSATEGTH-IERPENQYVYKIGIYGWRKRCLYLFVLLLLIILLVNFALAIWILKVMWFSPTGMG
          MV.E.Y....EGT...ERPE.Q.VYKI.IYGWRK.CLY.FVLLLL..LL.NFA...W.LK.M.F.PTGM.
Retrocopy MVCELYTTTMEGTT*RERPEDQ*VYKILIYGWRKHCLYIFVLLLLLVLLENFAPMMWVLKEMLFPPTGMD

Parental  HLRVTKDGLRLEGESEFLF-PLYAKEIHSRVDSSLLLHSTQNVTVNAQNSEGEVTGRLKVGPKMVEVQSQ
          HL.VTKDGL.LE.ESEFLF..LYAK.IHSRVDSSLLL.STQNVT.N..NS..EVTGRLKVGP..VEV.SQ
Retrocopy HLLVTKDGLCLEEESEFLFLLLYAKGIHSRVDSSLLLQSTQNVTLNTHNSQ*EVTGRLKVGPQKVEVRSQ

Parental  QFQISSKEGKSLFTVDESEVV-VGTDRLRVTGPEGALFEHSVETPLIRADPFQELRLE
          .F...SKEGK.L.T.D.SEVV.VGTDRL.VTGPEGALF.HSVETPL.RADP..ELRLE
Retrocopy HFPTNSKEGKPLSTLDDSEVV<VGTDRLQVTGPEGALFGHSVETPLVRADPLPELRLE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1937 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000006305	2 retrocopies	retro_mluc_1937 , retro_mluc_2289,