RetrogeneDB ID: retro_mluc_2289

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430183:234086..234586(+)
• Located in intron of: ENSMLUG00000017012

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: SGCG
• Ensembl ID: ENSMLUG00000006305
• Aliases: None
• Description: None

Sequence

>retro_mluc_2289
GGGGGAAAAAATGTGGGTCTCAAAATGGTAAAAGTCCAGAGTCAACAGTTTCAGATCAGTTCCAAAGAAGGCAAACCACT
GTTTACTGCTGATGAAAGTGAAGTTGTGGTTGGTGCTGATAGACATCGAGTAACTGGGCCTGAAGGGGCTCTTTTTGAAC
TTTCAGTGGAAACACCTCTCGTTAGAGCTGACCCATTTCAGGAGTTGAGATTAGAATCTCCCACACGAAGTCTAAGCATG
GATGCCCCAAAGGTGTTCATATGAAAGCTCATGCTGGGAAAATCAAGGCCCTTTCTCAAATGGACATCCTTTTTCATAGT
AATGATGGGATGCTTGTGCTTGAAACTGAAACTGTATGTTTACCCAAGTTGGTTCAGGGAACTCAGGGTCCTGCTGGCAG
CTCACAAAGACTCTGTGAAATTTGTGTGTGTCCAGATGGGAAGCTTTACCTGTCTGTGGCTGGCGCAAGTACCACATGAT
ATGAAAACAGTCACATCTGT

Alignment

ORF - retro_mluc_2289 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 86.9 %
• Parental protein coverage: 57.39 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  GRLKVGPKMVEVQSQQFQISSKEGKSLFTVDESEVVVGTDRLRVTGPEGALFEHSVETPLIRADPFQELR
          G...VG.KMV.VQSQQFQISSKEGK.LFT.DESEVVVG.DR.RVTGPEGALFE.SVETPL.RADPFQELR
Retrocopy GGKNVGLKMVKVQSQQFQISSKEGKPLFTADESEVVVGADRHRVTGPEGALFELSVETPLVRADPFQELR

Parental  LESPTRSLSMDAPK-GVHIKAHAGKIKALSQMDIIFHSNDGMLVLDSETVCLPKLVQGTWGPVGSSQRLY
          LESPTRSLSMDAPK.GVH.KAHAGKIKALSQMDI.FHSNDGMLVL..ETVCLPKLVQGT.GP.GSSQRL.
Retrocopy LESPTRSLSMDAPK<GVHMKAHAGKIKALSQMDILFHSNDGMLVLETETVCLPKLVQGTQGPAGSSQRLC

Parental  EICVCPDGKLYLSVAGTSTTCHENSHIC
          EICVCPDGKLYLSVAG.STT..ENSHIC
Retrocopy EICVCPDGKLYLSVAGASTT*YENSHIC

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2289 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000006305	2 retrocopies	retro_mluc_1937, retro_mluc_2289 ,