RetrogeneDB ID: retro_mluc_1946

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429959:244193..244802(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000025904
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000012934
• Aliases: None
• Description: None

Sequence

>retro_mluc_1946
GTGTGGATGAGAGCTTGGCTCCCACTGGAAGTGGAGGAGCAACTCAAGAAGAAATGTTTCACTCTGCTTTGCTACCATGA
TCCTAATTCCAATTCAGAACATGAAACCCTGAAGGCAGAAAAGGCATGGAAACTGGCAGAGATCCTGGTGAGTGAGAAAC
AGCAGTGCCAGGATGCCAAGAGCCAGCAGAAGGAGCAGGTGGTGCTGCTGGAGAAGAGTGCCACCTACTCCCAGGTGCTT
CTCCGCTGCCTCACCTTACTGCACAGATTGCTTCAGGAGCACCGGCTGAAGACTCAGTCTGAGCTAGACCACATCATTGC
CCAGTACCTGGAGATCAAGTGTAGTGCCATGGTCCTTAAGCTGAGGATGGAAGAGCTAAAGATTTTGTCTGACACTTACA
CTGCTGAGAAAGTAGAAGTTCATCATCTCATTAGGGATTGTTTGAAAGGGGCCATTCAGCTACAAGAACAGGACATGGAG
AAGTCCCAACAGGTCCTAAACACCTATGAGGTCCTTGGGGAGGAGTTTGACAAGCTGGTAAAAGAGTACACCCAACTCAA
GCAGACAACTGAGAACAGGCGTTGGGCACTCCAGGAGTTCAGCAAAGCC

Alignment

ORF - retro_mluc_1946 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 91.67 %
• Parental protein coverage: 56.2 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  VWMRARLPLEVEEQLKKKCFTLLCYHDPNSDSDHETLKAAKVWKLAEILVSEKQQCQDAKSQQKEQVVLL
          VWMRA.LPLEVEEQLKKKCFTLLCYHDPNS.S.HETLKA.K.WKLAEILVSEKQQCQDAKSQQKEQVVLL
Retrocopy VWMRAWLPLEVEEQLKKKCFTLLCYHDPNSNSEHETLKAEKAWKLAEILVSEKQQCQDAKSQQKEQVVLL

Parental  EKKSATYSQVLLRCLALLHRLLQEHRLKTQSELDRINAQYLEFKCSAMILKLRMEELKILSDTYTAEKVE
          EK.SATYSQVLLRCL.LLHRLLQEHRLKTQSELD.I.AQYLE.KCSAM.LKLRMEELKILSDTYTAEKVE
Retrocopy EK-SATYSQVLLRCLTLLHRLLQEHRLKTQSELDHIIAQYLEIKCSAMVLKLRMEELKILSDTYTAEKVE

Parental  VHRLIRDRLEGAIRLQEQDMEKSRQVLNTYEVLGEEFDKLVKEYTQLKQTTENRRWALQEFNKA
          VH.LIRD.L.GAI.LQEQDMEKS.QVLNTYEVLGEEFDKLVKEYTQLKQTTENRRWALQEF.KA
Retrocopy VHHLIRDCLKGAIQLQEQDMEKSQQVLNTYEVLGEEFDKLVKEYTQLKQTTENRRWALQEFSKA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1946 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 8 parental genes, and 8 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000008389	1 retrocopy	retro_cjac_757,
Dasypus novemcinctus	ENSDNOG00000002575	1 retrocopy	retro_dnov_712,
Homo sapiens	ENSG00000092036	1 retrocopy	retro_hsap_469,
Gorilla gorilla	ENSGGOG00000007504	1 retrocopy	retro_ggor_447,
Myotis lucifugus	ENSMLUG00000012934	1 retrocopy	retro_mluc_1946 ,
Otolemur garnettii	ENSOGAG00000000586	1 retrocopy	retro_ogar_382,
Pongo abelii	ENSPPYG00000005651	1 retrocopy	retro_pabe_265,
Pan troglodytes	ENSPTRG00000006153	1 retrocopy	retro_ptro_352,