RetrogeneDB ID: retro_mluc_1952

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429960:2175720..2179632(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000026122
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: SF3B1
• Ensembl ID: ENSMLUG00000000840
• Aliases: None
• Description: None

Sequence

>retro_mluc_1952
ATGGCGAAGATTGCCAAGACTCACGAAGATATCGAAGCACAGATTCGAGAAATTCAAGGCAAGAAGGCAGCTCTTGATGG
AGCTCAAGGAGTGGGCCTTGATTCTACAGGTTATTATGACCAGGAAATATATGGTGGAAGTGACAGCAGATTTGCTGGGT
ATGTGACATCAATTGCTACAACTGAACTTGAAGATGATGACGATGACTACTCATCATCTACAAGTTTGCTTGGTCAGAAG
AAGCCAAGATATCATGCCCCTGTGGCATTGCTTAATGATATACCACAGTCAACGGAACAGTATGATCCATTTGCTGAGCA
CCGACCTCCAAAGATTGCTGACCGGGAAGATGAATACAAAAAACACAGGCGGACCATGATAATTTCCCCAGAGCGTCTTG
ATCCTTTTGCAGATGGAGGAAAGACCCCTGATCCTAAAATGAATGCTAGAACTTACATGGATGTAATGCGAGAGCAGCAT
TTGACTAAAGAAGAGAGAGAAATTAGGCAACAACTAGCAGAAAAAGCTAAAGCTGGAGAACTGAAAGTCGTCAATGGAGC
AGCAGCGTCCCAGCCTCCCTCAAAACGAAAACGCCGTTGGGATCAAACAGCTGATCCGACTCCTGGTGCCACTCCCAGAA
AGCTGCCACGTTGGGATCAAGCAGAGACCCCTGGACATACCCCTTCCTTAAGATGGGATGAGACACCAGGCCGTGCAAAG
GGAAGTGAGACTCCTGGAGCAACTCCAGGCTCAAAAATATGGGATCCTACACCAAGTCACACACCAGCGGGAGCTGCTAC
TCCTGGACACGGTGATACACCAGGCCATGCAACACCAGGCCATGGAGGCGCAACTTCCAGTGCTCGTAAAAACCGATGGG
ATGAGACCCCCAAGACAGAAAGAGATACTCCTGGGCATGGAAGTGGATGGGCTGAGACGCCTCGAACAGATCGAGGTGGA
GATTCAATTGGTGAAACACCCACTCCTGGAGCCAGTAAAAGGAAATCACGTTGGGATGAAACACCAGCTAGTCAGATGGG
TGGAAGCACTCCTGTTCTGACCCCTGGGAAAACACCAATTGGCACACCAGCCATGAACATAGCTACCCCTACTCCAGGTC
ACATAATGAGTATGACTCCTGAACAGCTTCAGGCTTGGCGTTGGGAGAGAGAAATTGATGAGAGAAATCGCCCACTTTCT
GATGAAGAATTAGATGCTATGTTTCCAGAAGGATATAAGGTACTTCCTCCTCCAGCTGGTTATGTTCCTATTCGAACTCC
AGCTCGAAAGCTCACAGTCACTCCAACACCTTTGGGTGGTATGACTGGTTTCCACATGCAAACTGAAGACAGAACTATGA
AAAGTGTCAACGACCAACCATCTGGAAATCTTCCCTTTTTAAAACCTGATGATATTCAGTTCTTTGATAAACTTTTGGTG
GATGTTGATGAATCAACACTTAGTCCAGAAGAGCAAAAAGAGAGAAAAATAATGAAATTGCTTTTAAAAATTAAGAATGG
TACACCTCCAATGAGAAAGGCTGCATTGGGTCAGATTACTGATAAAGCTCGTGAATTTGGAGCTGGTCCTTTGTTTAATC
AGATCCTTCCTCTACTGATGTCTCCTACACTTGAGGATCAAGAACGTCATTTGCTTGTCAAAGTTATTGATAGAATATTA
TACAAACTTGATGACTTAGTTCGACCATATGTGCATAAGATCCTTGTGGTCATTGAACCATTGCTGATTGATGAAGATTA
CTATGCTAGAGTGGAAGGCCGAGAGATTATTTCTAATTTGGCAAAGGCTGCTGGTCTGGCTACTATGATCTCTACCATGA
GACCTGATATAGATAATATGGATGAATATGTTCGTAACACAACAGCTAGAGCTTTTGCTGTTGTAGCTTCTGCCCTGGGC
ATTCCTTCACTATTGCCCTTCTTAAAAGCTGTGTGCAAAAGCAAAAAGTCCTGGCAAGCGAGACACACTGGTATTAAGAT
TGTACAGCAGATAGCTATTCTCATGGGCTGTGCCATCTTGCCACATCTGAGAAGTTTAGTTGAAATCATTGAACACGGTC
TTGTGGATGAGCAGCAGAAAGTTCGGACCATTAGTGCGTTGGCCATCGCTGCCTTGGCTGAAGCAGCAACTCCTTATGGT
ATCGAATCTTTTGATTCTGTGTTGAAGCCTCTATGGAAGGGTATCCGCCAACACAGAGGAAAGGGTCTGGCTGCCTTCTT
AAAGGCTATTGGGTATTTTATTCCTCTCATGGATTCAGAATATGCCAACTACTATACGAGAGAAGTGATGTTAATCCTTA
TTCGAGAATTCCAATCTCCTGATGAAGAAATGAAGAAAATTGTGCTGAAGGTGGTAAAGTAGTGCTGTGGAACAGATGGT
GTAGAAGCAAACTACATTAAAACAGAGATTCTTCCTCCCTTTTTTAAACATTTCTGGCAACACAGAATGGCTTTAGATAG
AAGAAATTATCGACAGTTAGTTGATACTACTGTGGAGTTGGCTAACAAAGTAGGAGCAGCAGAAATTATATCCAGGATCG
TGGATGATCTGAAAGATGAAGCTGAACAGTACAGAAAAATGGTGATGGAAACAATTGAGAAGATTATGGGCAACTTGGGA
GCAGCAGATATTGATCACAAACTTGGAGAACAACTGATTGATGGCATTCTTTATGCTTTTCAAGAACAGACTACAGAGGA
CTCAGTAATGTTGAACGGATTTGGCACAGTGGTCAATGCACTTGGCAAACGGGTGAAACCTTACTTGCCTCAGATCTGTG
GTACAGTTTTGTGGCGTTTAAATAACAAGTCCGCAAAAGTTAGGCAACAGGCAGCTGACTTGATCTCTCGAACTTCTGTT
GTTATGAAGACTTGCCAAGAGGAAAAATTGATGGGGCACTTGGGTGTTGTTTTGTATGAGTATTTGGGTGAAGAGTACCC
TGAAGTACTGGGCAGCATTCTTGGAGCACTGAAGGCCATTGTGAATGTAATAGGTATGCATAAGATGACTCCACCAATTA
AAGATCTGCTGCCGAGACTCACTCCCATCTTAAAGAACAGGCATGAAAAAGTACAAGAGAATTGTATTGATCTTGTTGGG
CGTATTGCTGACAGGGGAGCTGAATATGTGTCAGCAAGGGAGTGGATGAGGATTTGCTTTGAGCTTTTGGAGCTCTTAAA
AGCTCACAAGAAAGCTATTCGTAGAGCCACAGTCAACACATTTGGTTATATTGCAAAGGCCATCGGCCCTCATGATGTGT
TGGCTACACTTTTAAACAACCTCAAAGTCCAGGAAAGGCAGAACAGAGTGTGTACCACTGTAGCAATAGCTATTGTCGCT
GAAACGTGTTCACCCTTCACAGCGCTCCCTGCCTTAATGAACGAATACAGAGTTCCTGAACTCAATGTTCAAAACGGAGT
GTTAAAGTCCCTTTCCTTCTTGTTCGAATATATCGGTGAAATGGGCAAGGACTACATTTGTGCTGTCACACCATTACTGG
AAGATGCTTTAATGGATAGGGACCTTGTACACAGACAGACGGCTAGTGCGGTGGTGCAACACATGTCACTGGGGGTTTAT
GGATTTGGTTGTGAAGATTCGCTGAATCACTTGTTGAACTATGTATGGCCCAATGTGTTTGAGACATCTCCCCATGTAAT
TCAGGCAGTGATGGGAGCCCTGGAGGCCTTGAGAGTTGCTATTGGACCATGTAGAATGTTGCAGTATTGTTTACAGGGTT
TGTTTCACCCAGCCCGGAAGGTCAGAGATGTGTATTGGAAAATTTACAACTCCATCTACATTGGTTCACAGGATGCTCTC
ATAGCACATTACCCAAGAATCTATAATGATGATAAGAACACCTATATTCGTTATGAACTTGACTATATCTTA

Alignment

ORF - retro_mluc_1952 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 97.24 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAATELEDDDDDY
          MAKIAKTHEDIEAQIREIQGKKAALD.AQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIA.TELEDDDDDY
Retrocopy MAKIAKTHEDIEAQIREIQGKKAALDGAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIATTELEDDDDDY

Parental  SSSTSLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPPKIADREDEYKKHRRTMIISPERLDPFADGG
          SSSTSLLGQKKP.YHAPVALLNDIPQSTEQYDPFAEHRPPKIADREDEYKKHRRTMIISPERLDPFADGG
Retrocopy SSSTSLLGQKKPRYHAPVALLNDIPQSTEQYDPFAEHRPPKIADREDEYKKHRRTMIISPERLDPFADGG

Parental  KTPDPKMHARTYMDVMREQHLTKEEREIRQQLAEKAKAGELKVVNGAAASQPPSKRKRRWDQTADQTPGA
          KTPDPKM.ARTYMDVMREQHLTKEEREIRQQLAEKAKAGELKVVNGAAASQPPSKRKRRWDQTAD.TPGA
Retrocopy KTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGELKVVNGAAASQPPSKRKRRWDQTADPTPGA

Parental  TPKKLSSWDQAETPGHTPSLRWDETPGRAKGSETPGATPGSKIWDPTPSHTPAGAATPGRGDTPGHATPG
          TP.KL..WDQAETPGHTPSLRWDETPGRAKGSETPGATPGSKIWDPTPSHTPAGAATPG.GDTPGHATPG
Retrocopy TPRKLPRWDQAETPGHTPSLRWDETPGRAKGSETPGATPGSKIWDPTPSHTPAGAATPGHGDTPGHATPG

Parental  HGGATSSARKNRWDETPKTERDTPGHGSGWAETPRTDRGGDSIGETPTPGASKRKSRWDETPASQMGGST
          HGGATSSARKNRWDETPKTERDTPGHGSGWAETPRTDRGGDSIGETPTPGASKRKSRWDETPASQMGGST
Retrocopy HGGATSSARKNRWDETPKTERDTPGHGSGWAETPRTDRGGDSIGETPTPGASKRKSRWDETPASQMGGST

Parental  PVLTPGKTPIGTPAMNMATPTPGHIMSMTPEQLQAWRWEREIDERNRPLSDEELDAMFPEGYKVLPPPAG
          PVLTPGKTPIGTPAMN.ATPTPGHIMSMTPEQLQAWRWEREIDERNRPLSDEELDAMFPEGYKVLPPPAG
Retrocopy PVLTPGKTPIGTPAMNIATPTPGHIMSMTPEQLQAWRWEREIDERNRPLSDEELDAMFPEGYKVLPPPAG

Parental  YVPIRTPARKLTATPTPLGGMTGFHMQTEDRTMKSVNDQPSGNLPFLKPDDIQYFDKLLVDVDESTLSPE
          YVPIRTPARKLT.TPTPLGGMTGFHMQTEDRTMKSVNDQPSGNLPFLKPDDIQ.FDKLLVDVDESTLSPE
Retrocopy YVPIRTPARKLTVTPTPLGGMTGFHMQTEDRTMKSVNDQPSGNLPFLKPDDIQFFDKLLVDVDESTLSPE

Parental  EQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRIL
          EQKERKIMKLLLKIKNGTPPMRKAAL.QITDKAREFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRIL
Retrocopy EQKERKIMKLLLKIKNGTPPMRKAALGQITDKAREFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRIL

Parental  YKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNMDEYVRNTTAR
          YKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNMDEYVRNTTAR
Retrocopy YKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNMDEYVRNTTAR

Parental  AFAVVASALGIPSLLPFLKAVCKSKKSWQARHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQK
          AFAVVASALGIPSLLPFLKAVCKSKKSWQARHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQK
Retrocopy AFAVVASALGIPSLLPFLKAVCKSKKSWQARHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQK

Parental  VRTISALAIAALAEAATPYGIESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVM
          VRTISALAIAALAEAATPYGIESFDSVLKPLWKGIRQHRGKGLAAFLKAIGY.IPLMD.EYANYYTREVM
Retrocopy VRTISALAIAALAEAATPYGIESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYFIPLMDSEYANYYTREVM

Parental  LILIREFQSPDEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNYRQLVDTTVEL
          LILIREFQSPDEEMKKIVLKVVK.CCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNYRQLVDTTVEL
Retrocopy LILIREFQSPDEEMKKIVLKVVK*CCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNYRQLVDTTVEL

Parental  ANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEEQLIDGILYAFQEQTTEDSVM
          ANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKL.EQLIDGILYAFQEQTTEDSVM
Retrocopy ANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLGEQLIDGILYAFQEQTTEDSVM

Parental  LNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQAADLISRTAVVMKTCQEEKLMGHLGVVLYE
          LNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQAADLISRT.VVMKTCQEEKLMGHLGVVLYE
Retrocopy LNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQAADLISRTSVVMKTCQEEKLMGHLGVVLYE

Parental  YLGEEYPEVLGSILGALKAIVNVIGMHKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADSINIFS
          YLGEEYPEVLGSILGALKAIVNVIGMHKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIAD......
Retrocopy YLGEEYPEVLGSILGALKAIVNVIGMHKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEYV

Parental  EISIWMLNMCQLLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVA
          ....WM.....LLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVA
Retrocopy SAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVA

Parental  ETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASA
          ETCSPFT.LPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYI.AVTPLLEDALMDRDLVHRQTASA
Retrocopy ETCSPFTALPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYICAVTPLLEDALMDRDLVHRQTASA

Parental  VVQHMSLGVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYCLQGLFHPARK
          VVQHMSLGVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALE.LRVAIGPCRMLQYCLQGLFHPARK
Retrocopy VVQHMSLGVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEALRVAIGPCRMLQYCLQGLFHPARK

Parental  VRDVYWKIYNSIYIGSQDALIAHYPRIYNDDKNTYIRYELDYIL
          VRDVYWKIYNSIYIGSQDALIAHYPRIYNDDKNTYIRYELDYIL
Retrocopy VRDVYWKIYNSIYIGSQDALIAHYPRIYNDDKNTYIRYELDYIL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1952 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000000840	5 retrocopies	retro_mluc_1952 , retro_mluc_2547, retro_mluc_2590, retro_mluc_404, retro_mluc_405,