RetrogeneDB ID: retro_mluc_2590

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL431216:32177..36090(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000023989
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: SF3B1
• Ensembl ID: ENSMLUG00000000840
• Aliases: None
• Description: None

Sequence

>retro_mluc_2590
ATGGCGAAGATTGCCAAGACTCACGAAGATATCGAAGCACAGATTCGAGAAATTCAAGGCAAGAAGGCAGCTCTTGATGA
AGCTCAAGGAGTGGGCCTTGATTCTACAGGTTATTATGACCAGGAAATATATGGTGGAAGTGACAGCAGATTTGCTGGGT
ATGTGACATCAATTGCTGCAACTGAACTTGAAGATGATGAGGATGACTACTCATCATCTACAAGTTTGCTTGGTCAGAAG
AAGCCAGGATATCATGCCCCTGTGGCATTGCTTAATGATATACCACAGTCAACGGAACAGTATGATCCATTTGCTGAGCA
CCGACCTCCAAAGATTGCTGACCGGGAAGATGAATACAAAAAGCACAGGCGGACCAAGATAATTTCCCCAGAGCATCTTG
ATCCTTTTGCAGATGGAGGGAAGACCCCTGATCCTAAAATGAATGCTAGAACTTACATGGATGTAATGCGAGAGCAGCAT
TTGACTAAAGAAGAGAGAGAAATTAGGCAACAACTAGCAGAAAAAGCTAAAGCTGGAGAACTGAAAGTCGTCAATGGAGC
AGCAGCATCCCAGCCTCCCTCAAAACGAAAACGCCGTTGGCATCAAACAGCTGACCAGACTCCTGGTGCCACTCCCAGAA
AGCTGCCACGTTGGGATCAAGCAGAGACCCCTGGACATACCCCTTCCTTAAGATGGGATGAGACACCAGGCCGTGCAAAG
GGAAGTGAGACTCCTGGAGCAACCCCAGGCTCAAAAATATGGGATCCTACACCAAGTCACACACCAGCGGGAGCTGCTAC
TCCTGGACGCGGGGATACACCAGGCCATGCAACACCAGGCCATGGAGGCGCAGCTTCCAGTGCTCGTAAAAACCGCTGGG
ATGAGACCCCCAAGACAGAAAGAGATACTCCTGGGCATGGAAGTGGATGGGCTGAGACGCCTCGAACAGATCGAGGTGGA
GATTCCATTGGTGAACCACCCACTCCTGGAGCCAGTAAAAGGAAATCACGTTGGGACGAAACACCAGCCAGTCAGATGGG
TGGAAGCACTCCTGTTCTGACCCCTGGGAGAACACCAATTGGCACACCAGCCATGAACATGGCTACCCCTACTCCAGGTC
ACATAATGAGTCTGACTCCTGAACAGCTTCAGGCTTGGCGTTGGGAGAGAGAAATTGATGAGAGAAATCGCCCACTTTCT
GATGAAGACTTAGATGCTATGTTTCCAGAAGGATATAAGGTACGTCCTCCTCCCACTGGTTATGTTCCTATTCGAACTCC
AGCTCGAAAGCTCACAGCCACTCCAACACCTTTGGGTGGTATGACTGGTTTCCACATGCAAACTGAAGACAGAACTATGC
AAAGTGTCAACGACCAACCATCTGGAAATCTTCCCTTTTTAAAACCTGACGATATTCAGTACTTTGATAAACTTTTGGTT
GATGTTGATGAATCAATACTTAGTCCAGAAGAGCAAAAAGAGAGAAAAATTATGAAATTGCTTTTAAAAATTAAGAATGG
TACCCCTCCAATGAGAAAGGCTGCCTTGCGTCAGATTACCGATAAAGCTCGTGAATTTGGAGCTGGTCCTTTGTTTAATC
AGATCCTTCCTCTACTGATGTCTCCTACACTTGAGGATCAAGAACATCATTTGCTTGTCAAAGTTATTGATAGAATATTA
TACAAACTTGATGACTTAGTTCGACCCTATGTGCATAAGATCCTTGTGGTCATTGAACCATTGCTGATTGATGAAGATTA
CTATGCGAGAGTGGAAGGCCGAGAGATTATTTCTAATTTGGCAAAGGCTGCTGGTCTGGCTACTATGATCTCTACCATGA
GACCCGATATAGATAATATGGATGAATATGTTCGTAACACAACAGCTAGAGCTTTTGCTGTTGTGGCTTCTGCCCTGGGC
ATTCCTTCACTATTGCCCTTCTTAAAAGCTGTGTGCAAAAGCAAGAAGTCCTGGCAAGCGAGACACACTGGTATTAAGAT
TGTACAGCAGATAGCTATTCTGATGGGCTGTGCCATCTTGCCACATCTGAGAAGTTTAGTTGAAATCATTGAACACGGTC
TTGTGGATGAGCAGCAGAAAGTTCGGACCATTAGTGCGTTGGCCATCGCTGCCTTGGCTGAAGCAGCAACTCCTTATGGT
ATTGAATCTTTTGATTCTGTGTTGAAGCCTCTATGGAAGGGTATCCGCCAACACAGAGGAAAGGGTCTGGCTGCCTTCTT
TAAAGGCTATTGGGTATCTTATTCCTCTCATGGATTCAGAATATGCCAACTACTATACTAGAGAAGTGATGCTAATCCTT
ATTCGAGAATTCCAATCTCCTGATGAAGAAATGAAAAAAATCGTGCTGAAGGTGGTAAAGCAGTGCTGTGGAACGGATGG
TGTAGAAGCAAACTACATTAAAACAGAGATTCTTCCTCCCTTTTTAAAACATTTCTGGCAACACAGAATGGCTTTAGATA
GAAGAAATTATCGACAGCTAGTTGATACTACTGTGGAGTTGGCTAACAAAGTAGGAGCAGCAGAAATTATATCCAGGATC
GTGGATGATCTGAAAGATGAAGCTGAACAGTACAGAAAAATGGTGATGGAAACAATTGAGAAAATTATGGGCAACTTGGG
AGCAGCAGATATTGATCACAAACTTGAAGAACAACTGATTGATGGCATTCTTTATGCTTTTTAAGAGCAGACTACAGAGG
ACTCAGTCATGTTGAACGGATTTGGCACAGTGGTCAACGCACTTGGCACACGGGTGAAACCTTACTTGCCTCAGATCTGT
GGTACAGTTTTGTGGCGTTTAAATAACAAGTCCGCAAAAGTTAGGCAACAGGCAGCTGACTTGATCTCTCGAACTGCTGT
TGTTATGAAGACTTGCCAAGAGGAAAAATTGATGGGGCACTTGGGTGTTGTTTTGTATGAGTATTTGGGTGAAGAGTACC
CGGAAGTACTGGGCAGCATTCTTGGAGCACTGAAGGCCATTGTGAATGTAATAGGTATGCATAAGATGACTCCACCAATT
AAAGATCTGCTGCCTAGACTCACTCCCATCTTAAAGAACAGGCATGAAAAAGTGCAAGAGAATTGTACTGATCTTGTTGG
GCGTATTGCTGACAGGGGAGCTGAATACGTGTCAGCAAGGGAGTGGATGAGGATTTGCTTTGAGCTTTTGGAGCTCTTAA
AAGCTCACAAGAAAGCTATTCGTAGAGCCACAGTCAACACATTTGGTTATATTGCAAAGGCCATCGGCCCTCATGATGTG
TTGGCTACACTTTTAAACAACCTCAAAGTCCAGGAAAGGCAGAACAGAGTGTGTACCACTGTAGCAATAGCTATCGTCGC
TGAAACGTGTTCACCCTTCACAGTGCTCCCTGCCTTAATGAACGAATACAGAGTTCCTGAACTCAATGTTCAGAACGGAG
TGTTAAAGTCCCTTTCCTTCTTGTTCGAATATATCGGTGAAATGGGCAAGGACTACATTTGTGCTGTCACACCATTACTG
GAAGATGCCCTGATGGATAGGGACCTTGTACACAGACAGACGGCTAGTGCGGTGGTGCAACACATGGCACTGGGGGTTTA
TGGATTTGGTTGTGAAGATTCGCTGAATCACTTGTTGAACTATGTATGGCCCAATGTGTTTGAGACATCTCCCCATGTAA
TTCAGGCAGTGATGGGAGCCCTGGAGGGCTTGAGAGTTGCTATTGGGCCACGTAGAATGTTGCAGTATTGTTTACAGGGC
TTGTTTCACCCAGCCCGGAAGGTCAGAGATGTGTATTGGAAAATTTACAACTCCATCTACATTGGTTCACAGGATGCTCT
CATAGCACATTACCCAAGAATCTATAATGATGATAAGAACACCTATATTCGTTATGAACTTGATTATATCTTA

Alignment

ORF - retro_mluc_2590 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 96.78 %
• Parental protein coverage: 100.0 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAATELEDDDDDY
          MAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAATELEDD.DDY
Retrocopy MAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAATELEDDEDDY

Parental  SSSTSLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPPKIADREDEYKKHRRTMIISPERLDPFADGG
          SSSTSLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPPKIADREDEYKKHRRT.IISPE.LDPFADGG
Retrocopy SSSTSLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPPKIADREDEYKKHRRTKIISPEHLDPFADGG

Parental  KTPDPKMHARTYMDVMREQHLTKEEREIRQQLAEKAKAGELKVVNGAAASQPPSKRKRRWDQTADQTPGA
          KTPDPKM.ARTYMDVMREQHLTKEEREIRQQLAEKAKAGELKVVNGAAASQPPSKRKRRW.QTADQTPGA
Retrocopy KTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGELKVVNGAAASQPPSKRKRRWHQTADQTPGA

Parental  TPKKLSSWDQAETPGHTPSLRWDETPGRAKGSETPGATPGSKIWDPTPSHTPAGAATPGRGDTPGHATPG
          TP.KL..WDQAETPGHTPSLRWDETPGRAKGSETPGATPGSKIWDPTPSHTPAGAATPGRGDTPGHATPG
Retrocopy TPRKLPRWDQAETPGHTPSLRWDETPGRAKGSETPGATPGSKIWDPTPSHTPAGAATPGRGDTPGHATPG

Parental  HGGATSSARKNRWDETPKTERDTPGHGSGWAETPRTDRGGDSIGETPTPGASKRKSRWDETPASQMGGST
          HGGA.SSARKNRWDETPKTERDTPGHGSGWAETPRTDRGGDSIGE.PTPGASKRKSRWDETPASQMGGST
Retrocopy HGGAASSARKNRWDETPKTERDTPGHGSGWAETPRTDRGGDSIGEPPTPGASKRKSRWDETPASQMGGST

Parental  PVLTPGKTPIGTPAMNMATPTPGHIMSMTPEQLQAWRWEREIDERNRPLSDEELDAMFPEGYKVLPPPAG
          PVLTPG.TPIGTPAMNMATPTPGHIMS.TPEQLQAWRWEREIDERNRPLSDE.LDAMFPEGYKV.PPP.G
Retrocopy PVLTPGRTPIGTPAMNMATPTPGHIMSLTPEQLQAWRWEREIDERNRPLSDEDLDAMFPEGYKVRPPPTG

Parental  YVPIRTPARKLTATPTPLGGMTGFHMQTEDRTMKSVNDQPSGNLPFLKPDDIQYFDKLLVDVDESTLSPE
          YVPIRTPARKLTATPTPLGGMTGFHMQTEDRTM.SVNDQPSGNLPFLKPDDIQYFDKLLVDVDES.LSPE
Retrocopy YVPIRTPARKLTATPTPLGGMTGFHMQTEDRTMQSVNDQPSGNLPFLKPDDIQYFDKLLVDVDESILSPE

Parental  EQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRIL
          EQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFNQILPLLMSPTLEDQE.HLLVKVIDRIL
Retrocopy EQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFNQILPLLMSPTLEDQEHHLLVKVIDRIL

Parental  YKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNMDEYVRNTTAR
          YKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNMDEYVRNTTAR
Retrocopy YKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNMDEYVRNTTAR

Parental  AFAVVASALGIPSLLPFLKAVCKSKKSWQARHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQK
          AFAVVASALGIPSLLPFLKAVCKSKKSWQARHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQK
Retrocopy AFAVVASALGIPSLLPFLKAVCKSKKSWQARHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQK

Parental  VRTISALAIAALAEAATPYGIESFDSVLKPLWKGIRQHRGKGLAAF-LKAIGYLIPLMDAEYANYYTREV
          VRTISALAIAALAEAATPYGIESFDSVLKPLWKGIRQHRGKGLAAF.LKAIGYLIPLMD.EYANYYTREV
Retrocopy VRTISALAIAALAEAATPYGIESFDSVLKPLWKGIRQHRGKGLAAF>LKAIGYLIPLMDSEYANYYTREV

Parental  MLILIREFQSPDEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNYRQLVDTTVE
          MLILIREFQSPDEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPF.KHFWQHRMALDRRNYRQLVDTTVE
Retrocopy MLILIREFQSPDEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFLKHFWQHRMALDRRNYRQLVDTTVE

Parental  LANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEEQLIDGILYAFQEQTTEDSV
          LANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEEQLIDGILYAF.EQTTEDSV
Retrocopy LANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEEQLIDGILYAF*EQTTEDSV

Parental  MLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQAADLISRTAVVMKTCQEEKLMGHLGVVLY
          MLNGFGTVVNALG.RVKPYLPQICGTVLWRLNNKSAKVRQQAADLISRTAVVMKTCQEEKLMGHLGVVLY
Retrocopy MLNGFGTVVNALGTRVKPYLPQICGTVLWRLNNKSAKVRQQAADLISRTAVVMKTCQEEKLMGHLGVVLY

Parental  EYLGEEYPEVLGSILGALKAIVNVIGMHKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADSINIF
          EYLGEEYPEVLGSILGALKAIVNVIGMHKMTPPIKDLLPRLTPILKNRHEKVQENC.DLVGRIAD.....
Retrocopy EYLGEEYPEVLGSILGALKAIVNVIGMHKMTPPIKDLLPRLTPILKNRHEKVQENCTDLVGRIADRGAEY

Parental  SEISIWMLNMCQLLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIV
          .....WM.....LLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIV
Retrocopy VSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIV

Parental  AETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTAS
          AETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYI.AVTPLLEDALMDRDLVHRQTAS
Retrocopy AETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYICAVTPLLEDALMDRDLVHRQTAS

Parental  AVVQHMSLGVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYCLQGLFHPAR
          AVVQHM.LGVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGP.RMLQYCLQGLFHPAR
Retrocopy AVVQHMALGVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPRRMLQYCLQGLFHPAR

Parental  KVRDVYWKIYNSIYIGSQDALIAHYPRIYNDDKNTYIRYELDYIL
          KVRDVYWKIYNSIYIGSQDALIAHYPRIYNDDKNTYIRYELDYIL
Retrocopy KVRDVYWKIYNSIYIGSQDALIAHYPRIYNDDKNTYIRYELDYIL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2590 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000000840	5 retrocopies	retro_mluc_1952, retro_mluc_2547, retro_mluc_2590 , retro_mluc_404, retro_mluc_405,