RetrogeneDB ID: retro_mluc_1965

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429965:2403032..2403822(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: CNN2
• Ensembl ID: ENSMLUG00000013160
• Aliases: None
• Description: None

Sequence

>retro_mluc_1965
ATCAGTCCTGACTTCCAGAAGGGTATGAAGGATAGAATTATCCTGTGCATACTCATGAATAAGCTGCAGCCAGGCTGTCT
CCCCAATATAACCACTCCATGCAAAACTGGCACCACCTAGAAAACCTCTCCAACTTCATCAAGGCCATGGTCAGTTACAG
CATAAACTCCGCGGTCCTGTTCGAGGCCAATAACCTATTTGAGAGTGGAAAATGACACAGGTGCAGGTCTCTCTTTTGGC
TCTGGTAGGGAAAGCCAAAACAAAGGAGCTGCAGAGTAGCGTGAACATTGGCATCAAGTACTCAAAGAAGCAGGAGCGGA
ATTACGGTAATGCCACCATGAAGGCAGACCAGTGCGTCATCAGGCTCCAGATGGGCACCAACAAGAGTGCTACCAGTCAG
GCATGACAGCATATGGCATGAGAAGGCATCTGTACAACCCCAAGAACCATATCCTGCCATCCATGCACCACTCAACAATC
AGTCTGCAAACGGGAACCAACAAATGTGCCAGGCAGGTGATCATGACAGCTCCCGGGACCGGGGCAACACATCTATGATA
CCAAGCCAGGGACCAACAAGTGTGACAACTCCTCCATGTCTCTGCAGATGGGCTGCATGCAAGGAGCCAACCAGAATGAC
CAAGTCTTTGGCCTGAGCTGGCAGTTATACAACCCCAAGTAGTGACCACAAGACCCAGGAGCTGACTGAGTTCCAGGGTC
AATTGGCAACTGCCCAAGTCCAGGGAAGGTCCTGGAGTATCCCTCCTACTACCAAGAGGAGACAGGCTAC

Alignment

ORF - retro_mluc_1965 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 76.49 %
• Parental protein coverage: 85.44 %
• Number of stop codons detected: 3
• Number of frameshifts detected: 4

Retrocopy - Parental Gene Alignment:

Parental  IGPDFQKGLKDGIILCTLMNKLQPGSVPKI-NRSMQNWHQLENLSNFIKAMVSYGMNPVDLFEANDLFES
          I.PDFQKG.KD.IILC.LMNKLQPG..P.I.N.SMQNWH.LENLSNFIKAMVSY..N...LFEAN.LFES
Retrocopy ISPDFQKGMKDRIILCILMNKLQPGCLPNI<NHSMQNWHHLENLSNFIKAMVSYSINSAVLFEANNLFES

Parental  GN-MTQVQVSLLALAGKAKTKGLQSGVDIGIKYSEKQERNFDDATMKAGQCVIGLQMGTNKCAS-QSGMT
          G..MTQVQVSLLAL.GKAKTK.LQS.V.IGIKYS.KQERN...ATMKA.QCVI.LQMGTNK.A..QSGMT
Retrocopy GK<MTQVQVSLLALVGKAKTKELQSSVNIGIKYSKKQERNYGNATMKADQCVIRLQMGTNKSAT<QSGMT

Parental  AYGTRRHLYDPKNHILPPMDHSTISLQMGTNKCASQVGMTAPGTR-RHIYDTKLGTDKCDNSSMSLQMGY
          AYG.RRHLY.PKNHILP.M.HSTISLQ.GTNKCA.QV.MTAPGT...HIYDTK.GT.KCDNSSMSLQMG.
Retrocopy AYGMRRHLYNPKNHILPSMHHSTISLQTGTNKCARQVIMTAPGTG>QHIYDTKPGTNKCDNSSMSLQMGC

Parental  TQGANQSGQVFGLGRQIYDPKYCPQGPVADGAPGSVGDCPSPGKAPEYPPYYQEEAGY
          .QGANQ..QVFGL..Q.Y.PK..PQ.P.AD..PGS.G.CPSPGK..EYP.YYQEE.GY
Retrocopy MQGANQNDQVFGLSWQLYNPK**PQDPGAD*VPGSIGNCPSPGKVLEYPSYYQEETGY

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1965 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 27 retrocopies.

Species	Parental gene accession	Retrocopies number
Gorilla gorilla	ENSGGOG00000028153	9 retrocopies	retro_ggor_1199, retro_ggor_1271, retro_ggor_1555, retro_ggor_1612, retro_ggor_1646, retro_ggor_1922, retro_ggor_2370, retro_ggor_305, retro_ggor_762,
Myotis lucifugus	ENSMLUG00000013160	4 retrocopies	retro_mluc_1536, retro_mluc_1965 , retro_mluc_2047, retro_mluc_2210,
Myotis lucifugus	ENSMLUG00000026228	1 retrocopy	retro_mluc_274,
Macaca mulatta	ENSMMUG00000015306	1 retrocopy	retro_mmul_1131,
Pongo abelii	ENSPPYG00000009302	12 retrocopies	retro_pabe_1299, retro_pabe_1397, retro_pabe_1838, retro_pabe_1920, retro_pabe_2171, retro_pabe_2249, retro_pabe_2900, retro_pabe_3512, retro_pabe_3515, retro_pabe_3543, retro_pabe_3823, retro_pabe_407,