Parental gene:

CNN2, ENSGGOG00000028153

Aliases:None
Description:None
Organism:Gorilla (Gorilla gorilla)
Coordinates:19:992687..1004513(+)


>ENSGGOG00000028153
ATGAGCTCCACGCAGTTCAACAAGGGCCCCTCGTACGGGCTGTCGGCCGAGGTCAAGAACCGGCTCCTGTCCAAATATGA
CCCCCAGAAGGAGGCAGAGCTCCGCACCTGGATCGAGGGACTCACCGGCCTCTCCATCGGCCCCGACTTCCAGAAGGGCC
TGAAGGATGGAACTATCTTATGCACACTCATGAACAAGCTACAGCCGGGCTCCATCCCCAAGATCAACCGCTCCATGCAG
AACTGGCACCAGCTAGAAAACCTGTCCAACTTCATCAAGGCCATGGTCAGCTACGGCATGAACCCTGTGGACCTGTTCGA
GGCCAATGACCTGTTTGAGAGTGGGAACATGACGCAGGTGCAGGTGTCTCTTCTTGCCCTGGCGGGGAAGGCCAAGACTA
AGGGGCTGCAGAGCGGGGTGGACATTGGCGTCAAGTACTCGGAGAAGCAGGAGCGGAATTTCGACGACGCCACCATGAAG
GCTGGCCAGTGCGTCATCGGGCTGCAGATGGGCACCAACAAATGCGCCAGCCAGTCGGGCATGACCGCGTACGGCACGAG
GAGGCATCTCTATGACCCCAAGAACCATATCCTGCCCCCCATGGACCACTCGACCATCAGCCTCCAGATGGGCACGAACA
AGTGCGCCAGCCAGGTGGGCATGACGGCTCCCGGGACCCGGCGGCACATCTATGATACCAAGCTGGGAACCGACAAGTGT
GACAACTCCTCCATGTCCCTGCAGATGGGCTACACGCAGGGCGCCAACCAGAGCGGCCAGGTCTTCGGCCTGGGCCGGCA
GATATATGACCCCAAGTACTGCCCGCAAGGCACAGTGGCCGATGGGGCTCCCTCGGGCACCGGCGACTGCCCGGACCCGG
GGGAGGTCCCTGAATATCCCCCTTACTACCAGGAGGAGGCCGGCTACTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 7 .82 RPM
SRP007412_cerebellum 5 .12 RPM
SRP007412_heart 32 .30 RPM
SRP007412_kidney 44 .49 RPM
SRP007412_liver 54 .07 RPM
SRP007412_testis 10 .26 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000020764 possible_ortholog 1 retrogene
retro_btau_612,
Dipodomys ordii ENSDORG00000001141 possible_ortholog 1 retrogene
retro_dord_672,
Erinaceus europaeus ENSEEUG00000015171 possible_ortholog 1 retrogene
retro_eeur_581,
Homo sapiens ENSG00000064666 ortholog_one2one 16 retrogenes
retro_hsap_1168, retro_hsap_1575, retro_hsap_1697, retro_hsap_2127, retro_hsap_2495, retro_hsap_255, retro_hsap_2576, retro_hsap_2764, retro_hsap_3505, retro_hsap_4168, retro_hsap_4170, retro_hsap_4175, retro_hsap_4257, retro_hsap_4269, retro_hsap_4326, retro_hsap_943,
Gorilla gorilla ENSGGOG00000013870 within_species_paralog 1 retrogene
retro_ggor_2312,
Myotis lucifugus ENSMLUG00000013160 possible_ortholog 4 retrogenes
retro_mluc_1536, retro_mluc_1965, retro_mluc_2047, retro_mluc_2210,
Macaca mulatta ENSMMUG00000015306 possible_ortholog 1 retrogene
retro_mmul_1131,
Mus musculus ENSMUSG00000004665 ortholog_one2one 2 retrogenes
retro_mmus_1824, retro_mmus_2317,
Nomascus leucogenys ENSNLEG00000001161 possible_ortholog 2 retrogenes
retro_nleu_1757, retro_nleu_2893,
Otolemur garnettii ENSOGAG00000010144 possible_ortholog 2 retrogenes
retro_ogar_1416, retro_ogar_1733,
Pongo abelii ENSPPYG00000009302 ortholog_one2one 12 retrogenes
retro_pabe_1299, retro_pabe_1397, retro_pabe_1838, retro_pabe_1920, retro_pabe_2171, retro_pabe_2249, retro_pabe_2900, retro_pabe_3512, retro_pabe_3515, retro_pabe_3543, retro_pabe_3823, retro_pabe_407,
Ictidomys tridecemlineatus ENSSTOG00000028367 possible_ortholog 1 retrogene
retro_itri_326,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ggor_305 75.73 65.70
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2. retro_ggor_762 82.63 68.93
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3. retro_ggor_1199 81.94 100.00
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4. retro_ggor_1271 82.90 99.35
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5. retro_ggor_1555 76.04 60.84
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6. retro_ggor_1612 82.05 100.00
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7. retro_ggor_1646 79.39 95.15
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8. retro_ggor_1922 84.11 96.76
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9. retro_ggor_2370 89.04 73.46
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Download FASTA sequences of all ENSGGOG00000028153 retrocopies