RetrogeneDB ID: | retro_mluc_1985 | ||
Retrocopylocation | Organism: | Microbat (Myotis lucifugus) | |
Coordinates: | GL429977:1991922..1992840(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LIASA | ||
Ensembl ID: | ENSMLUG00000004602 | ||
Aliases: | None | ||
Description: | Lipoyl synthase, mitochondrial A [Source:UniProtKB/TrEMBL;Acc:G1P2T3] |
Percent Identity: | 95.45 % |
Parental protein coverage: | 82.26 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | MSLRCGVVVRIVRPQVFGKYLCSPVRAVSSLPDKKKEFLKNGPDLQDFVSGDLADKSNWDEYKGNLKRQK |
MSLRCGVVVR.VRPQVFGKYLCSPVRAVSSLPDK.KEFL.NGPDLQDFVSGDLADKS.WDEYKGNLKRQK | |
Retrocopy | MSLRCGVVVRTVRPQVFGKYLCSPVRAVSSLPDKEKEFLQNGPDLQDFVSGDLADKSTWDEYKGNLKRQK |
Parental | GERLRLPPWLKTEIPMGKNYNKLKNTLRNLNLHTVCEEARCPNIGECW-GGGEYATATATIMLMGDTCTR |
GERLRLPPWLKTEIPMGKNYNKLKNTLRNLNLHTVCEEARCPNIGECW.GGGEYATATATIMLMGDTCTR | |
Retrocopy | GERLRLPPWLKTEIPMGKNYNKLKNTLRNLNLHTVCEEARCPNIGECW>GGGEYATATATIMLMGDTCTR |
Parental | GCRFCSVKTARKPPPLDANEPYNTAKAIAEWGLDYVVLTSVDRDDLPDGGAEHFAKTVSYLKERNPKILV |
GCRFCSVKTARKPPPLDANEPYNTAKAIAEWGLDYVVLTSVDRDDLPDGGAEHFAKTVSYLKERNPKILV | |
Retrocopy | GCRFCSVKTARKPPPLDANEPYNTAKAIAEWGLDYVVLTSVDRDDLPDGGAEHFAKTVSYLKERNPKILV |
Parental | ECLTPDFRGDLKAIEKVALSGLDVYAHNVETVPELQRKVRDPRANFDQSLRVLKHAKEVQPDVISKTSIM |
ECLTPDF...LKAIEK..LSGLDVYAHNVETVPELQRKVRDP.ANFDQSLRVLKHAKEVQPDVISKTSIM | |
Retrocopy | ECLTPDF**HLKAIEKSTLSGLDVYAHNVETVPELQRKVRDPMANFDQSLRVLKHAKEVQPDVISKTSIM |
Parental | LGLGEDDEQVYATMKA-LREADVDCLTL |
L.LGEDDEQVYATMKA..READVDCLTL | |
Retrocopy | LDLGEDDEQVYATMKA<IREADVDCLTL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000012946 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000007417 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000004602 | 2 retrocopies |
retro_mluc_1985 , retro_mluc_347,
|
Mus musculus | ENSMUSG00000029199 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000014293 | 1 retrocopy |