RetrogeneDB ID: | retro_mluc_2019 | ||
Retrocopylocation | Organism: | Microbat (Myotis lucifugus) | |
Coordinates: | GL429989:1204541..1204961(-) | ||
Located in intron of: | ENSMLUG00000005655 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | VBP1 | ||
Ensembl ID: | ENSMLUG00000015396 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 91.55 % |
Parental protein coverage: | 71.36 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | NGRRLHLGIPEAVFVEDVDSYMKQPGNETADTVLKKLDEQYQKYKFMELNLAQKKRRLKGQIPEIKQTLE |
NGR.LHLGIPEAVFVEDVDSYMKQPGNET.DTVLKKL.EQYQKYKFMELNLAQ.KR.LKGQIPEIKQTLE | |
Retrocopy | NGRWLHLGIPEAVFVEDVDSYMKQPGNETVDTVLKKLGEQYQKYKFMELNLAQRKRKLKGQIPEIKQTLE |
Parental | ILKYMQKKKKESTNSMETRFLLADNLYCKASVPPTDKVCLWLGANVMLEYDIDEAQALLEKNLTTATKNL |
I.KYMQ..KKESTNSMETRFLLADNLY.KASVPPT.KVCLWLGANVMLEYDIDEAQA.L.KNLTTATKNL | |
Retrocopy | IQKYMQ--KKESTNSMETRFLLADNLYGKASVPPTNKVCLWLGANVMLEYDIDEAQASLKKNLTTATKNL |
Parental | DS |
DS | |
Retrocopy | DS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Cavia porcellus | ENSCPOG00000013652 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000017655 | 2 retrocopies | |
Latimeria chalumnae | ENSLACG00000016144 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000016507 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000015396 | 3 retrocopies |
retro_mluc_1600, retro_mluc_2019 , retro_mluc_986,
|
Macaca mulatta | ENSMMUG00000015095 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000017448 | 2 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000002823 | 1 retrocopy |