RetrogeneDB ID: retro_mluc_2106

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430037:1443549..1443927(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: OIP5
• Ensembl ID: ENSMLUG00000009765
• Aliases: None
• Description: None

Sequence

>retro_mluc_2106
GTTATCTCCTGGAGGGATACAAACGACGTGGTTTCAGAAGCTCCCTTCCTGGTTGGCACTGAAGGTTTACTCAAAGGCAG
CACTTACGACCTTTTATTCTATAGTTCCTGTGGGATTCCCATTGGTTTCCATCTGTATTCTACCCAGGCTGCCCTGCCTG
CCTGGAGAGGTCACTTCTGCCTTTCCAGCAACAAAACGGTGTGCTAGCTCTTAAAAACAACATCCATTGTGAATGCATCT
GAGATGGATATTCACATCATGCCGCTGGTGGAAAAGGTTGCAGAGCGGAAAGAGAAGATACGACTAAGGCGCACTCACTT
GGGTTCACTGATGAAGATGCAGAAGGAAGTGACTCCTGACCAATCCAAATCAGGAAAC

Alignment

ORF - retro_mluc_2106 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 74.6 %
• Parental protein coverage: 55.26 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  VVFSRVTNNVVLEAPFLVGIEGLLKGSTYNLLFCSSCGIPIGFHLYSTHAALAALKGHFCLSSDKMECYL
          V...R.TN.VV.EAPFLVG.EGLLKGSTY.LLF.SSCGIPIGFHLYST.AAL.A..GHFCLSS.K..C.L
Retrocopy VISWRDTNDVVSEAPFLVGTEGLLKGSTYDLLFYSSCGIPIGFHLYSTQAALPAWRGHFCLSSNKTVC*L

Parental  LKTKAIVNASEMDIHNMPLPEKIAEIKEKIILTHNHLSSLMKMLKEVTPDQSNTEN
          LKT..IVNASEMDIH.MPL.EK.AE.KEKI.L...HL.SLMKM.KEVTPDQS...N
Retrocopy LKTTSIVNASEMDIHIMPLVEKVAERKEKIRLRRTHLGSLMKMQKEVTPDQSKSGN

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2106 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 7 parental genes, and 10 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000016777	1 retrocopy	retro_amel_242,
Bos taurus	ENSBTAG00000010766	1 retrocopy	retro_btau_1700,
Felis catus	ENSFCAG00000030520	1 retrocopy	retro_fcat_1387,
Myotis lucifugus	ENSMLUG00000009765	2 retrocopies	retro_mluc_2106 , retro_mluc_2341,
Mustela putorius furo	ENSMPUG00000008828	2 retrocopies	retro_mputfur_1518, retro_mputfur_1534,
Otolemur garnettii	ENSOGAG00000033746	1 retrocopy	retro_ogar_1761,
Sorex araneus	ENSSARG00000009593	2 retrocopies	retro_sara_351, retro_sara_629,