RetrogeneDB ID: retro_mluc_2167

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430069:875574..876571(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000023311
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: ZNF259
• Ensembl ID: ENSMLUG00000014012
• Aliases: None
• Description: None

Sequence

>retro_mluc_2167
GCCACCACAAGGATTCCAGAGTTAGATTTTGAAATTCCTGCCTTTAGCCAGAAGGGAGCTTTGACCACTGTTGAAGGATT
GATCAGCCGTGCTATCTCTGGCCTGGACAGGATCAGCCCACACGAAAGGCAAATGAAGAAGCTATAGCTGAAAAACTTGA
TGAGTTCATTGTCAAACTGAAAGAGCTAAAGCAGGTGGCCTCTCCTTTCACCATGATCATTGATGACCCCTCAGGGAACA
GCTTCAAGGAAAACTCACATGCTCCCCAGAAAGATGATGCCTTGATGATCACATATTATAACTGGACTCCGAATCAAAAG
GAGATGCTGGAGCTCCAGGCAGAAGCACCAGAAGAGAAGCCACAAGAGGAAGATCTCAGAAACGAAGTACTGCAGTTCAA
CACAAAATGCAATGCTCCAGCTCAGACCAACATGAAGCTAGTTCAAATCCCCCACTTTAAGAAGGTTATCATCATGGCTA
CCAACTGCCAGTACTGCGGTCAACCGACCAATGAGGTAAAGTCTGGAGGAGCAGTAGAGCCCTTGAGCACCAGGATCACT
CTCCATATCACAGATCCCTCAGATATGACCAGAGACCTGCTCAAGCCTGGGACATGCAATGTGGAAATCCCAGAACTGGA
ATTTGAGTTGGGAATGGCTGTTTCTGGGGGCAAGTTCACAACACTGGAGGGGCTGCTGAAAGACATCTGGGACCTGGTGA
CCAAGAACACTTCACACTGGGTGACAGTTCCAATCCTGGCCAGATGAACAAACTGCAGGAGTTTAGCCAGAAGTTGGACC
AGAGAATAGAGAGTAAAATGAAGGCCCACTTTATTATAAATGATCCAGCAATAAACAGCTATTTGCAGAATGTGTATGTA
TCTGAAAATGATCTAGAGATGAAGGTGGGACATTGTAAGTGCACGTTTGACCAAAATGAGGAGCTAGGGCTCAATGACAT
GAAGACGGAGGGCTATGAGAAAGGCCTGGCCCCACGG

Alignment

ORF - retro_mluc_2167 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 85.5 %
• Parental protein coverage: 74.01 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  ATTRIPELDFEIPAFSQKGALTTVEGLISRAISGLE-QDQPTRRANEEAVAERLDEFIVKLKELKQVASP
          ATTRIPELDFEIPAFSQKGALTTVEGLISRAISGL..QDQPTR.ANEEA.AE.LDEFIVKLKELKQVASP
Retrocopy ATTRIPELDFEIPAFSQKGALTTVEGLISRAISGLD<QDQPTRKANEEAIAEKLDEFIVKLKELKQVASP

Parental  FTLIIDDPSGNSFVENPHAPQKDDALVITHYNRTPQQEEMLGLQAEAPEEKPQEEDLRNEVLQFSTNCPE
          FT.IIDDPSGNSF.EN.HAPQKDDAL.IT.YN.TP.Q.EML.LQAEAPEEKPQEEDLRNEVLQF.T....
Retrocopy FTMIIDDPSGNSFKENSHAPQKDDALMITYYNWTPNQKEMLELQAEAPEEKPQEEDLRNEVLQFNT---K

Parental  CNAPAQTNMKLVQIPHFKEVIIMATNCEYCGHRTNEVKSGGAVEPLGTRITLRITDPSDMTRDLLKSETC
          CNAPAQTNMKLVQIPHFK.VIIMATNC.YCG..TNEVKSGGAVEPL.TRITL.ITDPSDMTRDLLK..TC
Retrocopy CNAPAQTNMKLVQIPHFKKVIIMATNCQYCGQPTNEVKSGGAVEPLSTRITLHITDPSDMTRDLLKPGTC

Parental  SVEIPELEFELGMAIFGGKFTTLEGLLKDIRDLVTKNP-FTLGDSSNPGQVDKLQEFSQKLDQIMEGKMK
          .VEIPELEFELGMA..GGKFTTLEGLLKDI.DLVTKN..FTLGDSSNPGQ..KLQEFSQKLDQ..E.KMK
Retrocopy NVEIPELEFELGMAVSGGKFTTLEGLLKDIWDLVTKNT<FTLGDSSNPGQMNKLQEFSQKLDQRIESKMK

Parental  AHFIMNDPAGNSYLQNVYAPEDDPEMKVERYKRTFDQNEELGLNDMKTEGYEAGLAPR
          AHFI.NDPA.NSYLQNVY..E.D.EMKV...K.TFDQNEELGLNDMKTEGYE.GLAPR
Retrocopy AHFIINDPAINSYLQNVYVSENDLEMKVGHCKCTFDQNEELGLNDMKTEGYEKGLAPR

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2167 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 10 parental genes, and 11 retrocopies.

Species	Parental gene accession	Retrocopies number
Echinops telfairi	ENSETEG00000011907	1 retrocopy	retro_etel_246,
Homo sapiens	ENSG00000109917	1 retrocopy	retro_hsap_3639,
Gorilla gorilla	ENSGGOG00000000664	1 retrocopy	retro_ggor_2455,
Myotis lucifugus	ENSMLUG00000014012	1 retrocopy	retro_mluc_2167 ,
Macaca mulatta	ENSMMUG00000020287	1 retrocopy	retro_mmul_1808,
Mus musculus	ENSMUSG00000032078	2 retrocopies	retro_mmus_3602, retro_mmus_3701,
Otolemur garnettii	ENSOGAG00000009977	1 retrocopy	retro_ogar_506,
Pongo abelii	ENSPPYG00000025914	1 retrocopy	retro_pabe_2986,
Pan troglodytes	ENSPTRG00000004312	1 retrocopy	retro_ptro_2464,
Sus scrofa	ENSSSCG00000015066	1 retrocopy	retro_sscr_1150,