RetrogeneDB ID: | retro_mmul_1808 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 4:155107789..155108945(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ZNF259 | ||
Ensembl ID: | ENSMMUG00000020287 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 82.31 % |
Parental protein coverage: | 84.36 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 4 |
Parental | IVSSF-CEHCGWN-TEIQSAGR-QDQGVRYTLTVRAPEDM-NREVVKTDSATTRIPELDFEIPAFSQKGA |
IVSSF.C.HCGWN.TEI.SAGR.QDQGVRYT.T.RA..DM..RE.VKTDSATTRIPELDF.IPA.SQKGA | |
Retrocopy | IVSSFSCHHCGWNNTEIRSAGRSQDQGVRYTRTFRAL*DM<DRETVKTDSATTRIPELDFQIPALSQKGA |
Parental | LTTVEGLITR-AISGLEQDQPARRANKDATAERIDEFIVKLKELKQVASPFTLIIDDPSGNSFVENPHAP |
L..VEGLIT..AISGLEQDQPARRANKDATAERIDEF.VK..ELKQ..SPFTLIIDDPSGNS.VENP.A. | |
Retrocopy | LSAVEGLITH>AISGLEQDQPARRANKDATAERIDEFVVKPEELKQAVSPFTLIIDDPSGNSSVENPRAA |
Parental | QKDDSLVITHYNRTQHQKEMLGLQEE-APAEKPEEEDLRNEVLQFNTNCPECNAPAQTNMKLVQIPHFKE |
QKDD.LVITHYN.T..QKEMLGLQ.E.AP.EKPEEED.RNEVLQFNTN.PE.NAPAQTNMKLVQIP.FKE | |
Retrocopy | QKDDALVITHYNWTRQQKEMLGLQAE<APTEKPEEEDVRNEVLQFNTNGPE*NAPAQTNMKLVQIPPFKE |
Parental | VIIMATNCENCGHRTNEVKSGGAVEPLGTRITLHITDPSDMTRDLLKSETCSVEIPELEFE-LGMAVLGG |
VIIMATNC.NC.H.T.EVKSG.AVE.LGTRITLHIT.PSDM.RDLLK.E.CSVEIPELEF..LG.A.LGG | |
Retrocopy | VIIMATNCKNCRHHTSEVKSGEAVESLGTRITLHITVPSDMIRDLLKCEVCSVEIPELEFD<LGVAILGG |
Parental | KFTTLEGLLKDIRELVTKNPFTLGDSSNPCQKERLQEFSQKMDQIIEGNMKAHFIMDDPAGNSYLQNVYA |
KF.TLEG.LKD..ELVTK.PFTLGDSSNP.Q.ERLQEFSQKMDQIIEGN.K.HFIMDDPAGNSYL.NVYA | |
Retrocopy | KFITLEGPLKDMWELVTKSPFTLGDSSNPGQTERLQEFSQKMDQIIEGNTKTHFIMDDPAGNSYL*NVYA |
Parental | PEDDPEMKVERYKRTFDQNEELGLNDMKTEGYEAGLASQR |
PEDDPEMKVE.YKRT.DQNEEL.L.D.KTEGY.AGLA.Q. | |
Retrocopy | PEDDPEMKVEHYKRTSDQNEELELSDIKTEGYKAGLAPQQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .22 RPM | 34 .06 RPM |
SRP007412_brain_prefrontal_cortex | 0 .08 RPM | 33 .08 RPM |
SRP007412_cerebellum | 1 .03 RPM | 26 .73 RPM |
SRP007412_heart | 0 .00 RPM | 15 .07 RPM |
SRP007412_kidney | 0 .00 RPM | 29 .81 RPM |
SRP007412_liver | 0 .00 RPM | 23 .20 RPM |
SRP007412_testis | 0 .11 RPM | 99 .93 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Echinops telfairi | ENSETEG00000011907 | 1 retrocopy | |
Homo sapiens | ENSG00000109917 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000000664 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000014012 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000020287 | 1 retrocopy |
retro_mmul_1808 ,
|
Mus musculus | ENSMUSG00000032078 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000009977 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000025914 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000004312 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000015066 | 1 retrocopy |