RetrogeneDB ID: retro_mluc_2270

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430168:71476..71749(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: INSIG2
• Ensembl ID: ENSMLUG00000028113
• Aliases: None
• Description: None

Sequence

>retro_mluc_2270
CTCACACTGGCTGCACTCTCCATTGGACTGTGGTGGACTTTTGATAGATCTCGAACTGGTTTTGGCCTTGGAGTAGGAAT
TGCTTTCTTGGCAACCTTGGTCTCTCAACTGCTAGTCTATAATGGTGTTTATCAATATGTTTCTCCAGATTTTCTCTATG
TTTGCTCTTGGTTACCATGTATATTTTTTGCTGGAGGCATAACAATGGGAAATATTGGTCGACAACTGGCAATGTCTGAA
TGTAAAGTTATCGCAGAAAAATCTCATCAGGAA

Alignment

ORF - retro_mluc_2270 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 95.6 %
• Parental protein coverage: 77.78 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  LTLAALSIGLWWTFDRSRTGFGLGVGIAFLATLVTQLLVYNGVYQYTSPDFLYVRSWLPCIFFAGGITMG
          LTLAALSIGLWWTFDRSRTGFGLGVGIAFLATLV.QLLVYNGVYQY.SPDFLYV.SWLPCIFFAGGITMG
Retrocopy LTLAALSIGLWWTFDRSRTGFGLGVGIAFLATLVSQLLVYNGVYQYVSPDFLYVCSWLPCIFFAGGITMG

Parental  NIGRQLAMYECKVIAEKSHQE
          NIGRQLAM.ECKVIAEKSHQE
Retrocopy NIGRQLAMSECKVIAEKSHQE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2270 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 9 parental genes, and 10 retrocopies.

Species	Parental gene accession	Retrocopies number
Choloepus hoffmanni	ENSCHOG00000001982	1 retrocopy	retro_chof_1185,
Cavia porcellus	ENSCPOG00000014739	1 retrocopy	retro_cpor_1173,
Erinaceus europaeus	ENSEEUG00000008765	1 retrocopy	retro_eeur_508,
Loxodonta africana	ENSLAFG00000028120	1 retrocopy	retro_lafr_1207,
Myotis lucifugus	ENSMLUG00000028113	1 retrocopy	retro_mluc_2270 ,
Macaca mulatta	ENSMMUG00000006354	1 retrocopy	retro_mmul_703,
Monodelphis domestica	ENSMODG00000000458	2 retrocopies	retro_mdom_1872, retro_mdom_542,
Otolemur garnettii	ENSOGAG00000007739	1 retrocopy	retro_ogar_940,
Rattus norvegicus	ENSRNOG00000006859	1 retrocopy	retro_rnor_159,