RetrogeneDB ID: retro_mluc_2315

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430193:829930..830338(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: RASSF3
• Ensembl ID: ENSMLUG00000009170
• Aliases: None
• Description: None

Sequence

>retro_mluc_2315
CCAGCAGCAGCGGGCTGCATGAACACTCTTTTCAATTTAGCAGCACGTAACACCGTGGGGGAAGTGATCGAGGGCTCTGC
TTCAAAAATTTCTTCTTGACCATGAGCTCTGCCCAGTTTGCACTTTATAAGCGCTGTTACCGGGAAGATCAAGTCTGTGC
CCCAAGCTCTCAGACCCGGAGCATCCACTCTGCCTGCGTTTGGCAGCAGGGCCCAGAACAGGCACACTTTGTTTTGTTCT
CCGTGAACATGAAATTGGAGAGTGGGAAGCCTCCAGCCTTCCAGAAAGGCAGAACTTCTTGCGTGTCTTGGACAAGGAAG
AGGATGCGCAGCTGTGTAACCTGAAGAGGCGCTACAGGCCTACAGACAGAAGCTGGAGGCGGCCCTGAGCGAGGTGTGGA
AACCCGGT

Alignment

ORF - retro_mluc_2315 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 77.46 %
• Parental protein coverage: 56.85 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 4

Retrocopy - Parental Gene Alignment:

Parental  PGNSGCMNTL-HISSTNTVGEVIE-ALLKKFLV-TESPAKFALYKRCYREDQVYAC-KLSDREHPLYLRL
          P...GCMNTL......NTVGEVIE.ALL.KFL..T.S.A.FALYKRCYREDQV.A..KLSD.EHPL.LRL
Retrocopy PAAAGCMNTLFNLAARNTVGEVIE>ALLQKFLL>TMSSAQFALYKRCYREDQVCAP<KLSDPEHPLCLRL

Parental  AAGPRTDTLSFVLREHEIGEVKWEAFSLPELQNFLRILDKEEDEQLYNLKRRY-TAYRQKLEAALSEVWK
          AAGPRT.TL.FVLREHEIGE..WEA.SLPE.QNFLR.LDKEED.QL.NLKRRY..AYRQKLEAALSEVWK
Retrocopy AAGPRTGTLCFVLREHEIGE--WEASSLPERQNFLRVLDKEEDAQLCNLKRRY<QAYRQKLEAALSEVWK

Parental  PG
          PG
Retrocopy PG

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2315 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000009170	1 retrocopy	retro_mluc_2315 ,
Oryctolagus cuniculus	ENSOCUG00000022833	1 retrocopy	retro_ocun_72,
Otolemur garnettii	ENSOGAG00000016553	1 retrocopy	retro_ogar_449,