RetrogeneDB ID: retro_mluc_2325

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430212:847454..847838(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: UNC119
• Ensembl ID: ENSMLUG00000012359
• Aliases: None
• Description: None

Sequence

>retro_mluc_2325
GAGGGGTTTGCCATCAACCCACAGGACCCGGAATCCAATGCTGGGCACTTTGTCTGATACCAGTTCATGCCTACCTTTCT
CTGCCTGAGGCAGGTGGGAGCTATGGTGGAGCTCACAGTAGTAGACAAACCTGTCGACAACTTCCACATGATAGACATGG
AGGTGATAGACTACTTCTGAAACCAGCTGCTCAAGAGCTTTGACTTCCACTGTGGCTTCTGCATTCCCAGAAGCAAGAAT
ACCTATGACTCTACCCCTCTCTCTAAGGAGCTGATCAATGAGATGATCCATCACCCATATGAGACACAGACTGACAGCTT
CTACCTTGTGGATGATGGGCTAGTGATGCACAGCAAAGCAGATTATTCCTACTATGGGATGCCC

Alignment

ORF - retro_mluc_2325 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 68.94 %
• Parental protein coverage: 68.98 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  ERLPINRRDLDPNAGRFVRYQFTPAFLRLRQVGATVEFTVGDKPVNNFRMIERH---YFRNQLLKSFDFH
          E...IN..D...NAG.FV.YQF.P.FL.LRQVGA.VE.TV.DKPV.NF.MI......YF.NQLLKSFDFH
Retrocopy EGFAINPQDPESNAGHFV*YQFMPTFLCLRQVGAMVELTVVDKPVDNFHMIDMEVIDYF*NQLLKSFDFH

Parental  FGFCIPSSKNTCEHIYDFPPLSEELINEMIRHPYETQSDSFYFVDDRLVMHNKADYSYSGTP
          .GFCIP.SKNT....YD..PLS.ELINEMI.HPYETQ.DSFY.VDD.LVMH.KADYSY.G.P
Retrocopy CGFCIPRSKNT----YDSTPLSKELINEMIHHPYETQTDSFYLVDDGLVMHSKADYSYYGMP

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2325 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 6 parental genes, and 6 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000004930	1 retrocopy	retro_amel_1529,
Callithrix jacchus	ENSCJAG00000012712	1 retrocopy	retro_cjac_2311,
Cavia porcellus	ENSCPOG00000002937	1 retrocopy	retro_cpor_939,
Felis catus	ENSFCAG00000024212	1 retrocopy	retro_fcat_923,
Myotis lucifugus	ENSMLUG00000012359	1 retrocopy	retro_mluc_2325 ,
Vicugna pacos	ENSVPAG00000004356	1 retrocopy	retro_vpac_402,