RetrogeneDB ID: | retro_vpac_402 | ||
Retrocopylocation | Organism: | Alpaca (Vicugna pacos) | |
Coordinates: | scaffold_1593:228550..229011(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | UNC119 | ||
Ensembl ID: | ENSVPAG00000004356 | ||
Aliases: | None | ||
Description: | unc-119 homolog (C. elegans) [Source:HGNC Symbol;Acc:12565] |
Percent Identity: | 83.97 % |
Parental protein coverage: | 64.98 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | DFVRFKNRDMDSGTVLFEIKKPPASERLPINLRDLDPNAGRFVRYQFTPAFLRLRQVGATVEFTVGDKPV |
DFVRF..RDMDSGT.LFEIKKPP.SERLPINL.DLDP.AGRFV..QF.PAF..LRQVGATV.FTVGDKPV | |
Retrocopy | DFVRFNIRDMDSGTALFEIKKPPDSERLPINLWDLDPSAGRFVCCQFMPAFFCLRQVGATVGFTVGDKPV |
Parental | NNFRMIERHYFRNQLLKSFDFHFGFCIPSSKNTCEHIYDF-PP-LSEELINEMIRHPYETQSDSFYFVDD |
NNF.M.ERH.F.NQLLKSFDFHFGFCIPSSKNTCEHI..F.PP.LSEELINEMI.HP.ETQSDSFYF.DD | |
Retrocopy | NNFHMTERHSFCNQLLKSFDFHFGFCIPSSKNTCEHICEF<PPSLSEELINEMIHHPHETQSDSFYFMDD |
Parental | RLVMHNKADYSYSGTP |
.LVMH.KADYSYSGTP | |
Retrocopy | QLVMH-KADYSYSGTP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000004930 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000012712 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000002937 | 1 retrocopy | |
Felis catus | ENSFCAG00000024212 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000012359 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000004356 | 1 retrocopy |
retro_vpac_402 ,
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