RetrogeneDB ID: | retro_mluc_234 | ||
Retrocopylocation | Organism: | Microbat (Myotis lucifugus) | |
Coordinates: | GL429788:11401371..11402721(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMLUG00000029377 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TUBA1B | ||
Ensembl ID: | ENSMLUG00000002622 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 93.56 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLE |
RECISIHVGQAGVQIGNACWELYCL.H.IQPDGQMPSDKTIGGGDDSFNT.FSETGAGKHVPRAVFVDLE | |
Retrocopy | RECISIHVGQAGVQIGNACWELYCLKHSIQPDGQMPSDKTIGGGDDSFNTYFSETGAGKHVPRAVFVDLE |
Parental | PTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSF |
PTVIDEVR.GTYRQLFHPEQLITGKEDAANNYA.GHYTIGKEIIDLVLDRIRKLAD.CTGLQGFLVFHSF | |
Retrocopy | PTVIDEVRNGTYRQLFHPEQLITGKEDAANNYACGHYTIGKEIIDLVLDRIRKLADPCTGLQGFLVFHSF |
Parental | GGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYD |
GGG.GSGFTSLLMERLSV.YGKKSKLEFSIYP.PQVSTAVVEPYNSILTTHTTLEHSDCA.MVDN.AIYD | |
Retrocopy | GGGNGSGFTSLLMERLSVNYGKKSKLEFSIYPVPQVSTAVVEPYNSILTTHTTLEHSDCAVMVDNKAIYD |
Parental | ICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKA |
ICRRNLDIER.TYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLV.YP.IHFPLATYAPVISAEKA | |
Retrocopy | ICRRNLDIERSTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVLYPHIHFPLATYAPVISAEKA |
Parental | YHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGF |
YHEQL.VAEITNA.FEPANQMVKCDP.H.KYMACCLLYRGDVVPKDVNA.IATIKTKRSIQFVDWC.TGF | |
Retrocopy | YHEQLTVAEITNAGFEPANQMVKCDPDHSKYMACCLLYRGDVVPKDVNATIATIKTKRSIQFVDWCSTGF |
Parental | KVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEA |
KVGINYQPPTVVPGGDLAKVQ.AVCMLSNTTAIAEAWARLDHKF.LMYAKRAF.HWYVGE.MEEGEFSEA | |
Retrocopy | KVGINYQPPTVVPGGDLAKVQQAVCMLSNTTAIAEAWARLDHKFNLMYAKRAFIHWYVGESMEEGEFSEA |
Parental | REDMAALEKDYEEVGVDSVEGEGEEEGEEY |
REDMAALEKDYEEVG.DS...EGE.EGEEY | |
Retrocopy | REDMAALEKDYEEVGADSI--EGEDEGEEY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000006872 | 4 retrocopies | |
Canis familiaris | ENSCAFG00000008640 | 8 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000008444 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000013016 | 1 retrocopy | |
Felis catus | ENSFCAG00000027011 | 1 retrocopy | |
Felis catus | ENSFCAG00000028689 | 3 retrocopies | |
Loxodonta africana | ENSLAFG00000010021 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000017551 | 3 retrocopies | |
Myotis lucifugus | ENSMLUG00000002622 | 4 retrocopies | |
Otolemur garnettii | ENSOGAG00000009435 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000001671 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000013266 | 7 retrocopies | |
Tursiops truncatus | ENSTTRG00000004794 | 1 retrocopy |