RetrogeneDB ID: retro_mluc_2404

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430322:247014..247424(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000026454
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: POLR3GL
• Ensembl ID: ENSMLUG00000016931
• Aliases: None
• Description: None

Sequence

>retro_mluc_2404
GGGCGGGGGCGGGGCCATGGCCAGTTGACCTCAACATGGAGGCCGTGGGCATTGGGATGGGGGATGCTCTGCCCTCACCC
ACACTGCAGCCTTCTCCACTCTCTCCCCCTCCCCCACAACAGTTCCGCCCCATGCCTCTGCCCTCGGGAGAAGGGGAGTA
TGTCCTGGCGCTGAAGCAGGAGCTGCTAGGAGCCATGAGGCAGCTCCCCTACTTCATCCGGCCAGCTGTCCCCAGGGGAG
GTGTGGAGCGTTACTCAGACAAATATCAGATGTCAGGGCCGACCGACAGTGCCATCGACTGGAACCCTGATTGGCGATGT
CTACCCCAGGAGCTAAGGATCCTAGTGAGGAAGCTACAGAAGGAGCGGACCACCATTCTACTTCCAAAGAGACCCTCCAA
GACCACAGAA

Alignment

ORF - retro_mluc_2404 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 84.89 %
• Parental protein coverage: 63.26 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  GRGRGRGQLT-FNMEAVGIGKGDALPPPTLQPSPLFPP--LEFRPVPLPSGEEGEYVLALKQELRGAMRQ
          GRGRG.GQLT..NMEAVGIG.GDALP.PTLQPSPL.PP....FRP.PLPSGE.GEYVLALKQEL.GAMRQ
Retrocopy GRGRGHGQLT<LNMEAVGIGMGDALPSPTLQPSPLSPPPPQQFRPMPLPSGE-GEYVLALKQELLGAMRQ

Parental  LPYFIRPAVPKRDVERYSDKYQMSGPIDSAIDWNPDWRRLPRELRIRVRKLQKERTTILLPKRPPKTTE
          LPYFIRPAVP...VERYSDKYQMSGP.DSAIDWNPDWR.LP.ELRI.VRKLQKERTTILLPKRP.KTTE
Retrocopy LPYFIRPAVPRGGVERYSDKYQMSGPTDSAIDWNPDWRCLPQELRILVRKLQKERTTILLPKRPSKTTE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2404 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000014954	1 retrocopy	retro_mluc_2233,
Myotis lucifugus	ENSMLUG00000016931	1 retrocopy	retro_mluc_2404 ,