RetrogeneDB ID: retro_mluc_2453

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430438:281207..281549(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: RAB10
• Ensembl ID: ENSMLUG00000009937
• Aliases: None
• Description: None

Sequence

>retro_mluc_2453
GGACTCGGGAGCGTAGGGAAGACCTGCGTCCTTTTCCGCTTTTCCAACGATGCCTTCAATACCACCTTCATTTCCACCAT
AGGAATCGACTTTAAGATCAAAACTGTTGAATTACAAGGAAAGAAGATCAAGCCACAGACATGGGACACAGCAGGCCAGG
AGCGATTTCACACCATCACAACCTCCTACTGCAGAGGAGCAATGGGTATTAGGCTAGTATATGACATCACCAATGGTCAA
AGTTTTGAAAACATCGGCAAATGGCTTAGAAATATAGATGAGCATGCCCCTGAAGATGGGGAAAGAATGTTACTAGGAAA
CAAGTGTGATATGGACGATAAA

Alignment

ORF - retro_mluc_2453 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 88.6 %
• Parental protein coverage: 57. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  GDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGI
          G...VGKTCVLFRFS.DAFNTTFISTIGIDFKIKTVELQGKKIK.Q.WDTAGQERFHTITTSY.RGAMGI
Retrocopy GLGSVGKTCVLFRFSNDAFNTTFISTIGIDFKIKTVELQGKKIKPQTWDTAGQERFHTITTSYCRGAMGI

Parental  MLVYDITNGKSFENISKWLRNIDEHANEDVERMLLGNKCDMEDK
          .LVYDITNG.SFENI.KWLRNIDEHA.ED.ERMLLGNKCDM.DK
Retrocopy RLVYDITNGQSFENIGKWLRNIDEHAPEDGERMLLGNKCDMDDK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2453 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Ciona intestinalis	ENSCING00000003959	1 retrocopy	retro_cint_21,
Echinops telfairi	ENSETEG00000010795	1 retrocopy	retro_etel_661,
Myotis lucifugus	ENSMLUG00000009937	1 retrocopy	retro_mluc_2453 ,
Monodelphis domestica	ENSMODG00000015821	1 retrocopy	retro_mdom_1577,
Tupaia belangeri	ENSTBEG00000016698	1 retrocopy	retro_tbel_4738,