RetrogeneDB ID:

retro_mluc_2461

Retrocopy
location
Organism:Microbat (Myotis lucifugus)
Coordinates:GL430459:42318..43412(+)
Located in intron of:ENSMLUG00000007276
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:OXA1L
Ensembl ID:ENSMLUG00000012893
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_mluc_2461
TTTGCAGAAGCCCAGGTTCAGGCCCCTCTGTCATTCCTGCAATGCCCTCACCCACAGCAGTAACTGAGGTGGCTTCTGGA
GAGACTGCAGATGTAGTCCAAGCTGCTGCAGAACAGAGCTTCACTGAACTTGGGCTGGGGTCATATACCCCAGTGGGATT
GATCCAGAACCTACTGGAATATATGCATGTTGACCTTGGCCTCCCTTGGTGGAGGGCCATTGCTCTGTGTACAGTCCTTG
CCCGCTGCCTGGTGTTTCCTCTCATTGTGAAGGGCCAACGAGAGGCAGCCAAGATCCACAGCCACATGCCAGAGATCCAG
AAGTTTTCCACTCGAATCAGAGAGGCCAAGTTGGCAGGAGACCATGCTGAGTTTTACAGGTCCTCCTTGGAGATGACATT
GTATCAGAAAAAGCATGACATTAAACTCTTTAAACCTCTCATTCTACCTCTGACTCAGGCGCCAATCTTCATCTCCTTCT
TCATTTCCTTGAGAGAAATGGCCAACCTTCCTGTACCCAGCCTACAGACAGGTGGCCTCTGGTGGTTCCAGGATCTCACA
CTATCTGACCCCACCTACATATTACCACTGGTAGTCACTGCTACAATGTGAGGTGTCCTTGAGTTATGTGCTGAGACTGG
TGTGCAAAGTTCTGACCTCCACTGGATGAGAAATGTTATGAGATTGATAACCCTTGCAGTCTTGCCCATAACTGTCCATT
TCCCCTTGGCAGTGTTCGTGTATTGGTTCTCCTCGAATATGTTTTCCCTGGTCCAGGTATCTTGCCTCCGGATTCCAGGT
GTACACACTATGCTTAAAATCCCCCAATGTGCTGTGCATGACTCCGACAAATTACCTCCACGGGAAGGCTTCATAAAGAG
CTTCAAAAGTGGCTGGAAGAATGCTGAAATCAACTATCAGTTACAAAAGCGTGAATGGTGCATGCAGAATCACTTGGAAC
TAGCAGCCAGGGCTCCCTTACGACAGACCTTTACCCACAACCCTCTGCTACAGCATGGTAAAAATCCCCCTCCCAACACC
CCTAACAGCAGCAGCAACAAACCAAAGTCAAAGAAACCCTGGCGTGACACACTC

ORF - retro_mluc_2461 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 93.99 %
Parental protein coverage: 78.83 %
Number of stop codons detected: 1
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalFAEAQVQAP-PVIPATPSPTAVTEVASGETADVVQAAAEQSFAELGLGSYTPVGLIQNLLEYMHVDLGLP
FAEAQVQAP..VIPA.PSPTAVTEVASGETADVVQAAAEQSF.ELGLGSYTPVGLIQNLLEYMHVDLGLP
RetrocopyFAEAQVQAP<SVIPAMPSPTAVTEVASGETADVVQAAAEQSFTELGLGSYTPVGLIQNLLEYMHVDLGLP
ParentalWWGAIALCTVLARCLVFPLIVKGQREAAKIHNHMPEIQKFSTRIREAKLAGDHAEFYRASSEMTLYQKKH
WW.AIALCTVLARCLVFPLIVKGQREAAKIH.HMPEIQKFSTRIREAKLAGDHAEFYR.S.EMTLYQKKH
RetrocopyWWRAIALCTVLARCLVFPLIVKGQREAAKIHSHMPEIQKFSTRIREAKLAGDHAEFYRSSLEMTLYQKKH
ParentalDIKLFKPLILPLTQAPIFISFFISLREMANLPVPSLQTGGLWWFQDLTLSDPTYILPLVVTATMWGVLEL
DIKLFKPLILPLTQAPIFISFFISLREMANLPVPSLQTGGLWWFQDLTLSDPTYILPLVVTATM.GVLEL
RetrocopyDIKLFKPLILPLTQAPIFISFFISLREMANLPVPSLQTGGLWWFQDLTLSDPTYILPLVVTATM*GVLEL
ParentalGAETGVQSSDLHWMRNVMRLIPLAVLPITVHFPSAVFVYWFSSNMFSLVQVSCLRIPGVRTMLKIPQRVV
.AETGVQSSDLHWMRNVMRLI.LAVLPITVHFP.AVFVYWFSSNMFSLVQVSCLRIPGV.TMLKIPQ..V
RetrocopyCAETGVQSSDLHWMRNVMRLITLAVLPITVHFPLAVFVYWFSSNMFSLVQVSCLRIPGVHTMLKIPQCAV
ParentalHDPDKLPPREGFIKSFKSGWKNAELNYQLQERERRMQNHLELAARGPLRQTFTHNPLLQHGKNPPPNTPN
HD.DKLPPREGFIKSFKSGWKNAE.NYQLQ.RE..MQNHLELAAR.PLRQTFTHNPLLQHGKNPPPNTPN
RetrocopyHDSDKLPPREGFIKSFKSGWKNAEINYQLQKREWCMQNHLELAARAPLRQTFTHNPLLQHGKNPPPNTPN
ParentalSSSNKPKSKQPWRDTL
SSSNKPKSK.PWRDTL
RetrocopySSSNKPKSKKPWRDTL

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Myotis lucifugus was not studied using RNA-Seq expression data.
Myotis lucifugus was not studied using ChIP-Seq data.
Myotis lucifugus was not studied using EST data.
Myotis lucifugus was not studied using FANTOM5 data.
retro_mluc_2461 was not experimentally validated.

Retrocopy orthology:
Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 5 parental genes, and 5 retrocopies.

Species Parental gene accession Retrocopies number
Myotis lucifugus ENSMLUG00000012893 1 retrocopy
retro_mluc_2461 ,
Monodelphis domestica ENSMODG000000053471 retrocopy
Oryctolagus cuniculus ENSOCUG000000007201 retrocopy
Otolemur garnettii ENSOGAG000000006311 retrocopy
Ictidomys tridecemlineatus ENSSTOG000000033181 retrocopy



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