>retro_ocun_367
CATGCCAGAGATCCAGAAGTTTTCTACACTAGTCCCAGAAGCCAGGTTGGCAGGTTGGCAGGAAGCTGTGCTGAGTTGTA
TAGGGCCTCCACAGAGAGGACACTTCACCAGAAAAAGCATGACATCAAACTCTTCAGTCCTTTTGTTATACCTCTGACCC
AGGCTCCGGGCTGCATTTCCTTCTTCATTGCCTTGACAGAGATGGCCAACTGTCCTGTGCCCAGCCTGTGGACAGGAAGC
TGCTGGTGGTTCCACGGTCCCCAGTATCTGATCCTATCTGCATTTTACTGATGGTGGTCACTGCTACAGTGTGGGGTCTC
CCGAAGCCAGGTGCTGAAACAGGTATGCAAAGTTCCTATTGTCAGTGGGTGGGAAACATTCTCAGAGCGATGCCTCTGGC
AGTTTTGCCCATAACCATCTTTTTTCCCCCTAGCAGTGTTTGTGTACTGGCTCTCCTCCAACCTGTTTTCCCTGGGCCAA
GTGGCCTGCCTCTGGGTTCCTGCTGCACACACTGTACTTAAAATGCCCCAGTGTGCTGCACATGACCCTGACAAATTGCC
TCCACTGGAAAGCTTCTTAAAGAGCTTCAAGAAAGGCTGGAAGAAAGCTAAGACTGCACATCAGTTATGCAAGCAGGAAT
GACACACGAGGAATCATTTGGAGCTAGCGGCCAGAGGTCCCTTAAGACAGACATTACTGAGAATCCTCTACTATGCCTGG
AAAGAACCATGCTTCCAACACCCCCAGCAGCAAA
ORF - retro_ocun_367 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
67.19 % |
Parental protein coverage: |
59.02 % |
Number of stop codons detected: |
1 |
Number of frameshifts detected |
4 |
Retrocopy - Parental Gene Alignment:
Parental | HNHVPEIQKFSARIREARLTGDHAELYRASSEMTLYQKKHDIKLLRPLILPLTQAPIFISFFIALREMAN |
| H...PE....S.R..........AELYRAS.E.TL.QKKHDIKL..P...PLTQAP..ISFFIAL.EMAN |
Retrocopy | HARDPEVFYTSPRSXXXXXXXSCAELYRASTERTLHQKKHDIKLFSPFVIPLTQAPGCISFFIALTEMAN |
|
Parental | LPVPSLQTGGLWWFQN-LTVSDPTYILPMVVTATMWGVLELGAETGMQSSDLQWMRNVLRVMPLAVLPIT |
| .PVPSL.TG..WWF.....VSDP..IL.MVVTAT.WG....GAETGMQSS..QW..N.LR.MPLAVLPIT |
Retrocopy | CPVPSLWTGSCWWFHG<SPVSDPICILLMVVTATVWGLPKPGAETGMQSSYCQWVGNILRAMPLAVLPIT |
|
Parental | IHFPS-AVFVYWLSSNLFSLGQVACLRIPAVRTVLKIPQRVVHDPDKLPPREGFIKSFKKGWKNAEMAHQ |
| I.FP..AVFVYWLSSNLFSLGQVACL..PA..TVLK.PQ...HDPDKLPP.E.F.KSFKKGWK.A..AHQ |
Retrocopy | IFFPP>AVFVYWLSSNLFSLGQVACLWVPAAHTVLKMPQCAAHDPDKLPPLESFLKSFKKGWKKAKTAHQ |
|
Parental | LRERERRMQNHLELAARGPLRQT-FTHNPLL-QPAKNHPSNTPKSK |
| L...E....NHLELAARGPLRQT..T.NPLL..P.KNH.SNTP.SK |
Retrocopy | LCKQE*HTRNHLELAARGPLRQT<ITENPLL<MPGKNHASNTPSSK |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP017611_brain |
0 .00 RPM |
34 .88 RPM |
SRP017611_kidney |
0 .00 RPM |
59 .09 RPM |
SRP017611_liver |
0 .00 RPM |
28 .83 RPM |
Oryctolagus cuniculus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ocun_367 retrocopy.
Oryctolagus cuniculus was not studied using FANTOM5 data.
retro_ocun_367 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_ocun_367 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
5 parental genes, and
5 retrocopies.