RetrogeneDB ID: retro_mluc_2537

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430783:51053..52273(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000000655
• Aliases: None
• Description: None

Sequence

>retro_mluc_2537
CTTGGGTCTTTGTCTTCTGAGGATCATGATTTTGACCCCATGGCTGAGATGTTGCTCCATGACTATGATGACGAAAGAAC
TCTTGAAGAAGAGGAGATGATGGATGAGGGTAAACACTTCAGCTCTGAAATTAAAGACTTAGAAACGGAAGGAAGCATGC
CTCTGCAAGACCTGCTGGCCTTCTACGGCTCTGAGCCCGTGCTGCCCACCTCGGTGGAGCCCAGTGCTCTCAGCTCCCCA
AGTGAACTTGCCGACGAGCTGCCAGACATGACACTGGACAAAGAGGAAATAGCAAAAGAGCTGCTGTCAGGTTACGAGGA
GGAGTCGCCGTCTTCAGCAGATGACCTGATGCCGTCTCTGACTTTCCACGAGGCTTCCGACTTCTTCCCCAGGCCTTTGC
GCTCAAATACTACTTATGAAGGAGATAAAGAATCAGAGATTGAAGATGCTGAAACAGACAGTGGTAAATCACCTGAAGAT
TTGAGGAAGGAAATAATGATCCGTTTACAATATCAGGCCGAGATCCCCCCTTATCTTGGAGAGTATGGTGGTGACGATGA
TGATGAGAAAGTATCTGAAGATGGAGACCAGCTCCTTTGGCGTCCTGGTGTGGTTGGGGAGAGCAAAGTGAAGGAGTACC
TTGTCGAGGCCGCATTCAGAACTGGAAATGAGAAAATGGTGGACAGGGTTTCGGCAGGAGCACTCAGCAGGGACAATGAG
CAGGCATTATATGAGCTGCTCAGGTGCGACCATAACATCAAGGCGGCGCTCGAGAGGTATTGCGGCAGCTGAAAGGCATC
TCAGGAGGGAATGACTGCGTGGGCAGAAGAAGAAATCCAGAGCTTTGAACATGCACTCATGATCTTTGGAAAAGACTTTT
ATCGTATACAGAAGAACTGGGTGAAGACCAGAACGGTGGCGGAGTGCGTGGCGTTCTACTACATGAGGAAGATGTGGAAG
AAGTCTGAGCACAAGGACTGCTTCGACTACTTTGTGCAGTAGACTTGGTTTGGGAAGAATTGCTACCACCACCACCCCAG
AGTGACAGACTACATGGACCACCTGGTGGATGAGACAGAAGCTCTGGGATGGGGGGTGGAGGGGCAGTCAGTTCTCCTGG
CTTAACCGCCACCGGCCCTGAACCTGTTCCTGGTCCGCAGCTGAACATAGTCAACTCTTTCACTGCAGGGGACTTGACAG
CCTTGACCAGCAGTGCAGCA

Alignment

ORF - retro_mluc_2537 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 80.15 %
• Parental protein coverage: 72.16 %
• Number of stop codons detected: 3
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  VGSLSSEDHDFDPTAEMLVHDYDDERTLEEEEMMDEGKNFSSEIEDLEKEGSMPLEDLLAFYGYEPVLPA
          .GSLSSEDHDFDP.AEML.HDYDDERTLEEEEMMDEGK.FSSEI.DLE.EGSMPL.DLLAFYG.EPVLP.
Retrocopy LGSLSSEDHDFDPMAEMLLHDYDDERTLEEEEMMDEGKHFSSEIKDLETEGSMPLQDLLAFYGSEPVLPT

Parental  AVEPSAHSSPSELADELPDMTLDKEEIAKDLLSGDDEETQSSADDLTPSVTSHEASDFFPRPLRSNTTCD
          .VEPSA.SSPSELADELPDMTLDKEEIAK.LLSG..EE..SSADDL.PS.T.HEASDFFPRPLRSNTT..
Retrocopy SVEPSALSSPSELADELPDMTLDKEEIAKELLSGYEEESPSSADDLMPSLTFHEASDFFPRPLRSNTTYE

Parental  GDKESEIEDVETDSGNSPEDLRKEIMIGLQYQAEIPPYLGEY---EDDENASEDGDQLLWRPGVVAESKV
          GDKESEIED.ETDSG.SPEDLRKEIMI.LQYQAEIPPYLGEY....DDE..SEDGDQLLWRPGVV.ESKV
Retrocopy GDKESEIEDAETDSGKSPEDLRKEIMIRLQYQAEIPPYLGEYGGDDDDEKVSEDGDQLLWRPGVVGESKV

Parental  KEYLVEAAFRTGNEKMVDRVSAGALTRDNEQALYELLKCDHDIKEAVERYCRSGKASPEGMTAWTEEECR
          KEYLVEAAFRTGNEKMVDRVSAGAL.RDNEQALYELL.CDH.IK.A.ERYC.S.KAS.EGMTAW.EEE..
Retrocopy KEYLVEAAFRTGNEKMVDRVSAGALSRDNEQALYELLRCDHNIKAALERYCGS*KASQEGMTAWAEEEIQ

Parental  SFEHALMIFGKDFYLIQKNKVKTRTVAECVAFYYM---WKKSER---YDYFAQQTRFGKKRYNHHPGVTD
          SFEHALMIFGKDFY.IQKN.VKTRTVAECVAFYYM...WKKSE.....DYF.Q.T.FGK..Y.HHP.VTD
Retrocopy SFEHALMIFGKDFYRIQKNWVKTRTVAECVAFYYMRKMWKKSEHKDCFDYFVQ*TWFGKNCYHHHPRVTD

Parental  YMDRLVDETEALGGTVSSPGLTATRPDPV-PDP----QLNILNSFTAGDLTALTGSAA
          YMD.LVDETEALG..V.........P.P..P.P....QLNI.NSFTAGDLTALT.SAA
Retrocopy YMDHLVDETEALGWGVEGQSVLLA*PPPA<PEPVPGPQLNIVNSFTAGDLTALTSSAA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2537 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000000655	2 retrocopies	retro_mluc_2537 , retro_mluc_437,
Mus musculus	ENSMUSG00000032727	1 retrocopy	retro_mmus_315,