RetrogeneDB ID: retro_mluc_437

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: AAPE02064822:6339..7243(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000025207
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000000655
• Aliases: None
• Description: None

Sequence

>retro_mluc_437
ACAGCTCCCCAAGAACTTGCCGACCAGCTGCCAGACATGACACTGGACAAGGAGGAAATAGCAAAAGACCTGCTGTCAGG
TTATGACGAAGAGGCACCGTCTTCCGCAGACGACCTGATGCTGTCGCTGACTTTCCATGAGGCTCCCGACTTCTTCCCCA
GGCCTTTGCGCTCAAATACTACCTGTGAAGGAGATAAAGAATCAGAGATTGAAGATGTTGAAACAGACAGTGGTAACTCA
CCTGAAGATTTGAGGAAGGAAATAAGGATCGGTTTACAATATCAGGCCGAGATCCCCCCTTATCTTGGAGTGTATCGTGA
TGATGATGATGATGAGAAAGCGTCTGAAGATGGAGACCAGCTCCTTTGGCGTCCTGGTGTGGTTGCAGAGAGCAAAGTGA
AGGAGTACCTTGTCGAGGCCGCATTCAGAACTGGAAATGAGAAAACGGTTGACGGGGTTTCGGCCGGAGCACTCACCAGG
GACAATGAGCAGGCATTATATGAGCTGCTCAGGTGCGACCATAACATCAAGGAGGCGCTGGAGAGGTATTGCTGCAGAGG
AAAGGCATCTCAGGAGGGAATGACTGCGTGGACAGAAGAAGAAATCCGGAGCTTTGAACACACACTCATGCTCTTTGGAA
AAGACTTCTATCGTATACAGAACAAGGTGAAGACCAGAACGGTGGCGGAGTGCCTGGCGTTCTACTACATGAGGAAGATG
TGGAAGAAGTCTGAGCACTAGGACTGCTTCGACTACTTCGCGCAGCAGACAGGGTTCAGGAAGAATCGCTACAACCACCA
CCCCAGAGTGACAGACTACACGGACCGCCTGGTGGATGAGACAGAAGCTCTGGGAGGGGACAGTCAGTTCTCCCGGCTTA
ACCGCCACCCGCCCTGACCCTGTT

Alignment

ORF - retro_mluc_437 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 84.16 %
• Parental protein coverage: 53.66 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  SSPSELADELPDMTLDKEEIAKDLLSGDDEETQSSADDLTPSVTSHEASDFFPRPLRSNTTCDGDKESEI
          ..P.ELAD.LPDMTLDKEEIAKDLLSG.DEE..SSADDL..S.T.HEA.DFFPRPLRSNTTC.GDKESEI
Retrocopy TAPQELADQLPDMTLDKEEIAKDLLSGYDEEAPSSADDLMLSLTFHEAPDFFPRPLRSNTTCEGDKESEI

Parental  EDVETDSGNSPEDLRKEIMIGLQYQAEIPPYLGEY---EDDENASEDGDQLLWRPGVVAESKVKEYLVEA
          EDVETDSGNSPEDLRKEI.IGLQYQAEIPPYLG.Y....DDE.ASEDGDQLLWRPGVVAESKVKEYLVEA
Retrocopy EDVETDSGNSPEDLRKEIRIGLQYQAEIPPYLGVYRDDDDDEKASEDGDQLLWRPGVVAESKVKEYLVEA

Parental  AFRTGNEKMVDRVSAGALTRDNEQALYELLKCDHDIKEAVERYCRSGKASPEGMTAWTEEECRSFEHALM
          AFRTGNEK.VD.VSAGALTRDNEQALYELL.CDH.IKEA.ERYC..GKAS.EGMTAWTEEE.RSFEH.LM
Retrocopy AFRTGNEKTVDGVSAGALTRDNEQALYELLRCDHNIKEALERYCCRGKASQEGMTAWTEEEIRSFEHTLM

Parental  IFGKDFYLIQKNKVKTRTVAECVAFYYM---WKKSER---YDYFAQQTRFGKKRYNHHPGVTDYMDRLVD
          .FGKDFY.IQ.NKVKTRTVAEC.AFYYM...WKKSE.....DYFAQQT.F.K.RYNHHP.VTDY.DRLVD
Retrocopy LFGKDFYRIQ-NKVKTRTVAECLAFYYMRKMWKKSEH*DCFDYFAQQTGFRKNRYNHHPRVTDYTDRLVD

Parental  ETEALG-GTVSSPGLTATRPDPV
          ETEALG.GTVSSPGLTATRPDPV
Retrocopy ETEALG>GTVSSPGLTATRPDPV

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_437 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 2 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000000655	2 retrocopies	retro_mluc_2537, retro_mluc_437 ,
Mus musculus	ENSMUSG00000032727	1 retrocopy	retro_mmus_315,