>retro_mluc_2538
CCCCTGTGCATTCTGCCACAACACTGGGAGAATCACAATGCTGTGTTTACTGCCACTGCATTTAAAGACATTGGGTCCTA
TCACTATTGGGATGCAGCAAAGAGAGGACTCGACCTCCAGGGTTTTCTGAAGGATGTGGAGAATGCTCCTGAGTGTTCCA
TCTTTGTCCTCCATGCCTGTGCACACAACCCACTGGAACCGACCCAACTCCAGAGCAGTGGAGGGAGATCACCTCAGTCA
TAAAGTGCCCGTTTCTGTTTCCTTTCTTTGACTCAGCCTATCAGGGCTTCACATCTGGAAACCTAGAGAAAGATGCCTGG
GCCATTTTCTATTTTGTGTCTGAAGGATTTGAGCTCTTCTGTGCCCAGTCCTTCTCCAAAATTTTTGGGCTCTACAATGA
GCACATAGGGAATGTGATCATAGTTGCAAAAGAATCTGACAGCATGCAGCAGGCTCTTTCTCACATAAATAATGTGCAAA
TTACCTTGTCTAATATCCCTGCTCAGGGAGTGTGGATCATGGTCACTACCCTCTCTAACCCTGAGCTCCTTAAGGAATGG
ACAGGTAATATGAAGACAATGGCTGTCCAGATTCTGACCATGAGATCTGAACTATGGGCACAATTATAAGCCCTCCAGCC
CCCTGGAACCTGGAACCATATCACCGAGTAAATTGAAATGATCAGCTTCACGGGGTTGAAGACCAAGCAGGTTGACTATA
TGGTCAGTGAAAAGCACATCTATCTGCTGCCAAGTGATCTAATCAATATGTGTGACTTGACCACCAAAAACCTAGATTAT
GTGGCCACCTTCATCCATGACACAGTCACCAAAATCCAG
ORF - retro_mluc_2538 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
75.89 % |
Parental protein coverage: |
68.04 % |
Number of stop codons detected: |
2 |
Number of frameshifts detected |
1 |
Retrocopy - Parental Gene Alignment:
Parental | PIYVSSPTWENHNAVFTAAGFKDIRSYHYWDATKRGLDLRGFLNDLENAPEFSIFVLHACAHNP-TGTDP |
| P.......WENHNAVFTA..FKDI.SYHYWDA.KRGLDL.GFL.D.ENAPE.SIFVLHACAHNP.TGTDP |
Retrocopy | PLCILPQHWENHNAVFTATAFKDIGSYHYWDAAKRGLDLQGFLKDVENAPECSIFVLHACAHNP<TGTDP |
|
Parental | TPEQWKEIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFCAQSFSKNFGLYNERVGNL |
| TPEQW.EI.SV.K..FLFPFFDSAYQGF.SGNLEKDAWAI.YFVSEGFELFCAQSFSK.FGLYNE..GN. |
Retrocopy | TPEQWREITSVIKCPFLFPFFDSAYQGFTSGNLEKDAWAIFYFVSEGFELFCAQSFSKIFGLYNEHIGNV |
|
Parental | TVVAKEPDSMQRVLSQMEKIVRITWSNPPAQGARIVATTLSNPDLFKEWKGNVKTMADRILTMRSELRAR |
| ..VAKE.DSMQ..LS.....V.IT.SN.PAQG..I..TTLSNP.L.KEW.GN.KTMA..ILTMRSEL.A. |
Retrocopy | IIVAKESDSMQQALSHINN-VQITLSNIPAQGVWIMVTTLSNPELLKEWTGNMKTMAVQILTMRSELWAQ |
|
Parental | LEALKTPGTWNHITEQIGMFSFTGLNTKQVEYLVSEKHIYLLPSGRINMCGLTTKNLDYVATSIHEAVTK |
| L.AL..PGTWNHITE.I.M.SFTGL.TKQV.Y.VSEKHIYLLPS..INMC.LTTKNLDYVAT.IH..VTK |
Retrocopy | L*ALQPPGTWNHITE*IEMISFTGLKTKQVDYMVSEKHIYLLPSDLINMCDLTTKNLDYVATFIHDTVTK |
|
Parental | IK |
| I. |
Retrocopy | IQ |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Myotis lucifugus was not studied using RNA-Seq expression data.
Myotis lucifugus was not studied using ChIP-Seq data.
Myotis lucifugus was not studied using EST data.
Myotis lucifugus was not studied using FANTOM5 data.
retro_mluc_2538 was not experimentally validated.
Retrocopy orthology:
Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
3 parental genes, and
3 retrocopies.