RetrogeneDB ID: retro_mputfur_861

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896961.1:6163432..6164538(+)
• Located in intron of: ENSMPUG00000010840

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: GOT1
• Ensembl ID: ENSMPUG00000016996
• Aliases: None
• Description: glutamic-oxaloacetic transaminase 1, soluble [Source:HGNC Symbol;Acc:4432]

Sequence

>retro_mputfur_861
ATGGCGCCTCCGTCTGTGTTCGCCGAGGTTCCGCAGGCCCAGCCGGTCCTGGTCTTTAAGCTCACTGCTGACTTCTGGGA
GGATCCGGACCCCGCAAGGTCAACCTGGGAGTGGGAGCTTATCGCACAGATGACTGCCAGCCCTGGGTTTTGCCAGTCGT
GAGGAAGGTGGAGCAGAAGCTCACTAATGACAGCAGTCTGAACCATGAGTATCTGCCTATCCTCGGCCTCAGTGAGTTCC
AGACCTGTGCTTCCCGCCTGGCCCTCGGGGATAACAGCCCAGCTATCCAGGAGAAGCGGGTTGGAGGTGTGCAGTCTCTA
GGGGGGACAGGGGCACTCCGAATTGGAGCCGAGTTCTTAGCCCGATGGTACAATGGAACCAACAACAAGGATACACCTGT
CTATGTGTCCTCACCAACCTGGGAGAATCATAATGGTGTGTTTTCTGCTGCTGGATTTAAAGACATTCAGTCCTATCACT
ATTGGGATGCAGCGAAGAGAGGACTTGATCTCCAAGGTTTCCTGAATGATCTGAAGAGTGCCCCCGAGTTCTCCATCTTT
GTCCTCCGTGCCTGTGCTCACAACCCAACTGGGACTGACCCAACTCCGGAGCAGTGGAAGCAGATCGCGTCCATCATGAT
ACGCCGGTTTCTTTTCCCCTTCTTTGATTCAGCCTATCAGGGCTTTGCATCTGGAGACCTAGAGAAAGATGCCTGGGCCA
TTCGCTATTTCCTGTCTGAAGGATTTGAGCTCTTCTGCGCTCAGTCCTTCTCCAAGAACTTCGGGCTCTACAATGAGTGA
GTGGGCAATCTGACTGTGGTTGCAAAAGATCCTAATAGCATCCTGCGGGTCCTTTCCCAGATAGAGAAGATTGTGTGAAT
TACTTGGTCCAACCCTTCTGCTCAGGGCGCACGGATTGTGGCCTGTACCCTCTCTAATCCTGAGCTCTTTAAGGAATGGA
CAGGTAATGTGAAGATAATGGCCGACCGGATTCTGACCATGAGATCTGAACTCAGGGCATGCTTAGAAGCCCTCAAGACG
CCTGGAACCTGGAACCACATCACTGAACATATTGGAATGTTCAGCTTCACTGGCTTGAACCCCAAG

Alignment

ORF - retro_mputfur_861 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 94.32 %
• Parental protein coverage: 94.62 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MAPPSVFAEVPQAQPVLVFKLTADFREDPDP-RKVNLGVGAYRTDDCQPWVLPVVRKVEQKLANDSSLNH
          MAPPSVFAEVPQAQPVLVFKLTADF.EDPDP.RKVNLGVGAYRTDDCQPWVLPVVRKVEQKL.NDSSLNH
Retrocopy MAPPSVFAEVPQAQPVLVFKLTADFWEDPDP<RKVNLGVGAYRTDDCQPWVLPVVRKVEQKLTNDSSLNH

Parental  EYLPILGLTEFRTCASRLALGDNSPAIQEKRVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSP
          EYLPILGL.EF.TCASRLALGDNSPAIQEKRVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSP
Retrocopy EYLPILGLSEFQTCASRLALGDNSPAIQEKRVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSP

Parental  TWENHNGVFSAAGFKDIRSYHYWDAAKRGLDLQGFLNDLESAPEFSIFVLHACAHNPTGTDPTPEQWKQI
          TWENHNGVFSAAGFKDI.SYHYWDAAKRGLDLQGFLNDL.SAPEFSIFVL.ACAHNPTGTDPTPEQWKQI
Retrocopy TWENHNGVFSAAGFKDIQSYHYWDAAKRGLDLQGFLNDLKSAPEFSIFVLRACAHNPTGTDPTPEQWKQI

Parental  ASVMKRRFLFPFFDSAYQGFASGDLEKDAWAVRYFVSEGFELFCAQSFSKNFGLYNERVGNLTVVAKDPD
          AS.M.RRFLFPFFDSAYQGFASGDLEKDAWA.RYF.SEGFELFCAQSFSKNFGLYNE.VGNLTVVAKDP.
Retrocopy ASIMIRRFLFPFFDSAYQGFASGDLEKDAWAIRYFLSEGFELFCAQSFSKNFGLYNE*VGNLTVVAKDPN

Parental  SILRVLSQMEKIVRITWSNPPAQGARIVACTLSNPELFKEWTGNVKTMADRILTMRSELRARLEALKTPG
          SILRVLSQ.EKIV.ITWSNP.AQGARIVACTLSNPELFKEWTGNVK.MADRILTMRSELRA.LEALKTPG
Retrocopy SILRVLSQIEKIV*ITWSNPSAQGARIVACTLSNPELFKEWTGNVKIMADRILTMRSELRACLEALKTPG

Parental  TWNHITEQIGMFSFTGLNRK
          TWNHITE.IGMFSFTGLN.K
Retrocopy TWNHITEHIGMFSFTGLNPK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_861 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_861 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000007333	1 retrocopy	retro_mluc_2538,
Mustela putorius furo	ENSMPUG00000004862	1 retrocopy	retro_mputfur_567,
Mustela putorius furo	ENSMPUG00000016996	1 retrocopy	retro_mputfur_861 ,
Pteropus vampyrus	ENSPVAG00000008890	1 retrocopy	retro_pvam_418,