RetrogeneDB ID: retro_mluc_2569

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL431016:55354..56457(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: CTPS2
• Ensembl ID: ENSMLUG00000006158
• Aliases: None
• Description: None

Sequence

>retro_mluc_2569
ATGAAGTGCACCCTAGCCACCGGTGGGGTGATCTCGAGCATTGGGAAAGGGATCATCGCGAGCAGCATTGGGACGATTCT
AAAATCATGGGGACTCCGAGTTACCGCCATCAAAATCGACCCCTATATCAACATCGATGCAGGCACTTTTTCACCTTATG
AGCACGGAGAAGTGTTTGTCTTAAACGATGGTGGAGAAGTTGATTTAGACCTTGGAAATTATGAAAGGTTCTTGGATATT
AATCTTTATAAAGACAACAACATCACCACTGGGAAGATATATCAGCATGTGATTAATAAAGAGAGGCGTGGTGACTACCT
GGGGAAAACAGTACAAGTTGTCCCTCACATTACTGATGCTGTCCAGGAGTGGGTTATGCATCAAGCCATGGTGCCAGTGG
ATGGTCATAAGGAGGAGCTTCAAATATGTGTTATTGAGTTGGGTGGCACCATCGGAGACATTGAAGGAATGCCATTTGTG
GAAGCATTCAGACAATTTCAGTTTAAGGCAAAAAGAGAGAATTTCTGTAACATTCATGTTAGCCTTGTCCCACAGCCCAG
TGCTACCGGAGAACAAAACACCAAACCCACACAAAACAGTGTTCGTGCGCTGAGGGGGTTGGGCCTGTCTCCTGATCTGA
TCATCTGCGGAGTTCAAAGCCCATCGAAATGGCTGTGAAGGAAAAGATTTCTATGTTTTGTCATGTGAACCCTGAACAGG
ACATATGTATCCATGATGTTTCTTCTACATGCTGAGTGCCTGTGCTTTTGGAGGAACAGGGCATTGTTAAATATTTCAAA
GAGAGATTGGATTTGCCCATTGGTGATTCTGCAAATAATTTGCTTTTCAAGTGGAAAAATATGGCTGACAGGTATGAAAG
GCTACAGAAAACGTGCTCCATAGCCCTGGTCAGCAAATACACCAAGCTGAGGGACTGCTATGCCTCTGTGTTTAAAGCTC
TGGGACACTCAGCCTTGGCCATCAACCACAAGTTGAATCTGATGTACATCGACTCCATTGATCTGGAGCCCACCACCGAA
ACTGAGGACCCTGTGAAATTCCATGAAGCGTGGCAGAAGCTATGCAAAGCTGAGTGAGTCCTG

Alignment

ORF - retro_mluc_2569 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 95.39 %
• Parental protein coverage: 62.59 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MKYILVTGGVISGIGKGIIASSIGTILKSWGLRVTAIKIDPYINIDAGTFSPYEHGEVFVLNDGGEVDLD
          MK..L.TGGVIS.IGKGIIASSIGTILKSWGLRVTAIKIDPYINIDAGTFSPYEHGEVFVLNDGGEVDLD
Retrocopy MKCTLATGGVISSIGKGIIASSIGTILKSWGLRVTAIKIDPYINIDAGTFSPYEHGEVFVLNDGGEVDLD

Parental  LGNYERFLDINLYKDNNITTGKIYQHVINKERRGDYLGKTVQVVPHITDAVQEWVMNQAMVPVDGHKEEP
          LGNYERFLDINLYKDNNITTGKIYQHVINKERRGDYLGKTVQVVPHITDAVQEWVM.QAMVPVDGHKEE.
Retrocopy LGNYERFLDINLYKDNNITTGKIYQHVINKERRGDYLGKTVQVVPHITDAVQEWVMHQAMVPVDGHKEEL

Parental  QICVIELGGTIGDIEGMPFVEAFRQFQFKAKRENFCNIHVSLVPQPSATGEQKTKPTQNSVRALRGLGLS
          QICVIELGGTIGDIEGMPFVEAFRQFQFKAKRENFCNIHVSLVPQPSATGEQ.TKPTQNSVRALRGLGLS
Retrocopy QICVIELGGTIGDIEGMPFVEAFRQFQFKAKRENFCNIHVSLVPQPSATGEQNTKPTQNSVRALRGLGLS

Parental  PDLIVC-RSSKPIEMAVKEKISMFCHVNPEQVICIHDVSSTYRVPVLLEEQGIVKYFKERLDLPIGDSAN
          PDLI.C.RSSKPIEMAVKEKISMFCHVNPEQ.ICIHDVSST..VPVLLEEQGIVKYFKERLDLPIGDSAN
Retrocopy PDLIIC<RSSKPIEMAVKEKISMFCHVNPEQDICIHDVSSTC*VPVLLEEQGIVKYFKERLDLPIGDSAN

Parental  NLLFKWKNMADRYERLQKTCSIALVGKYTKLRDCYASVFKALEHSALAINHKLNLMYIDSIDLEHTTETE
          NLLFKWKNMADRYERLQKTCSIALV.KYTKLRDCYASVFKAL.HSALAINHKLNLMYIDSIDLE.TTETE
Retrocopy NLLFKWKNMADRYERLQKTCSIALVSKYTKLRDCYASVFKALGHSALAINHKLNLMYIDSIDLEPTTETE

Parental  DPVKFHEAWQKLCKADGVL
          DPVKFHEAWQKLCKA..VL
Retrocopy DPVKFHEAWQKLCKAE*VL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2569 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000006158	1 retrocopy	retro_mluc_2569 ,
Otolemur garnettii	ENSOGAG00000001255	1 retrocopy	retro_ogar_2926,
Tarsius syrichta	ENSTSYG00000013561	1 retrocopy	retro_tsyr_1368,