>retro_tsyr_1368
CACCGAGTACCTGTGCTTTTGGAGAAACAAGACATTGTCAAATATTTTAAGGAGAGATTAGACCTGTCCATTGGTGATTC
TGCAGGTAATTTGCTTTTCAAGTGGAGGAATATGGCTGACAGGTATGAAAGGTCACAGAAAACATGCTACATAGCTCTGG
TTGGCAAATACACCAAGCTTAGGGAGTACCATACCTTTGTGCTGAAAGCTCTTTAACACTCAGCCTTGGCCTTCAACCAC
AAATTGAATCTGATTTACATAGACTCCACTGATCTGGAGCAGATCGCTGAAACTGAGGACCCTGTGAAATTCTATGAAGC
TTGGCAGAAGCTATGCACAGCTAACAGTATTCTTGTGCCCAGAGGCTTTGGAATCAGAGAAACATTGGGAAAACTCCAGG
TGATTTCTTGGACAAGGGCAAAGAAGATTCCTTTTCTGGGAGTTTGCCTTGGGATGCTACTGGCAGTAACAGGGTTTTGA
AGAAAATGCCTTGACTTGAAAGATGCTGATTCCACAGAATTTGAGCCCAATGCCCCAATTACTGTGGTGATTGATGTGCC
CAAACACAACCTGGCAATTTGGGAGGAACAATGAGACTGGGACTAAGAAGAATTATTTTCAAAACTGAAAATTCAATACT
AAGGAAACCCTATGGTGATGCTCCTTTTATAGAAGAAAGACACAGACATTGGTATGAAGTGAGCCCTAAATGGATCAGTC
AATTTGAACAGAGTGACTTAAGTTTTGCAGGTCAAGATGTCGATGGAGAGAGGATAGAAATCACTGAACTGGCAACTCAT
CTCTATTTTGTCAGGGTCCAATTCCATCATGAGTTTTCTTCTAGGCTGATGAAGACTTCCCCTCCATTCCTGGGGCTGTG
ACTTGAGGCAACTGGTAACCTGAATACTTACCTGCAACAGGGCTGCAAACTGTCTTTTAGTGATAGATACAGTGATGACA
GCTTTTCAGAGCCAAGGATAGTTGAGCTGGAAATAAGC
ORF - retro_tsyr_1368 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
76.26 % |
Parental protein coverage: |
66.4 % |
Number of stop codons detected: |
3 |
Number of frameshifts detected |
1 |
Retrocopy - Parental Gene Alignment:
Parental | YRVPVLLEEQGIVKYFKERLDLPIGDSASNLLFKWRNMADRYERLQKTCSIALVGKYTKLRDCYASVFKA |
| .RVPVLLE.Q.IVKYFKERLDL.IGDSA.NLLFKWRNMADRYER.QKTC.IALVGKYTKLR.....V.KA |
Retrocopy | HRVPVLLEKQDIVKYFKERLDLSIGDSAGNLLFKWRNMADRYERSQKTCYIALVGKYTKLREYHTFVLKA |
|
Parental | LEHSALAINHKLNLMYIDSIDLEQITETEDPVKFHEAWQKLCKADGILVPGGFGIRGTLGKLQAISWART |
| L.HSALA.NHKLNL.YIDS.DLEQI.ETEDPVKF.EAWQKLC.A..ILVP.GFGIR.TLGKLQ.ISW.R. |
Retrocopy | L*HSALAFNHKLNLIYIDSTDLEQIAETEDPVKFYEAWQKLCTANSILVPRGFGIRETLGKLQVISWTRA |
|
Parental | KKIPFLGICLGMQLAVIEFARNCLNLKDADSTEFEPNAPVPVVIDMPEHN-PGNLGGTMRLGIRRTIFKT |
| KKIPFLG.CLGM.LAV..F.R.CL.LKDADSTEFEPNAP..VVID.P.HN.PGNLGGTMRLG.RR.IFKT |
Retrocopy | KKIPFLGVCLGMLLAVTGF*RKCLDLKDADSTEFEPNAPITVVIDVPKHN<PGNLGGTMRLGLRRIIFKT |
|
Parental | ENSILXXXXXXXXXXXXXXXXXXXVNPKLISQFEESDLSFAGQDVDGERMEIIELANHPYFVGVQFHPEF |
| ENSIL...................V.PK.ISQFE.SDLSFAGQDVDGER.EI.ELA.H.YFV.VQFH.EF |
Retrocopy | ENSILRKPYGDAPFIEERHRHWYEVSPKWISQFEQSDLSFAGQDVDGERIEITELATHLYFVRVQFHHEF |
|
Parental | SSRPMKPSPPYLGLLLAATGNLNTYLQQGCKLSSSDRYSDASDDSFSEPRITELEIN |
| SSR.MK.SPP.LGL.L.ATGNLNTYLQQGCKLS.SDRYSD...DSFSEPRI.ELEI. |
Retrocopy | SSRLMKTSPPFLGL*LEATGNLNTYLQQGCKLSFSDRYSD---DSFSEPRIVELEIS |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Tarsius syrichta was not studied using RNA-Seq expression data.
Tarsius syrichta was not studied using ChIP-Seq data.
Tarsius syrichta was not studied using EST data.
Tarsius syrichta was not studied using FANTOM5 data.
retro_tsyr_1368 was not experimentally validated.
Retrocopy orthology:
Tarsius syrichta does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
3 parental genes, and
3 retrocopies.