RetrogeneDB ID: retro_mluc_2582

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL431135:22564..23135(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: EFNA2
• Ensembl ID: ENSMLUG00000007874
• Aliases: None
• Description: None

Sequence

>retro_mluc_2582
CCTGCCGCCACCGCCAAGGATGCCTCCAGAGCCAACTCAGACCGCTACACAGTCTACTGGTACCGCAGCAACCCCAGGTT
CCACACGAGTGCGGGGGACGACCGTGGGGGCTGCACGGTGGTGAGCATCAATGACTACCTGGACATCTACTGCCCGCGCT
ACGGGACGCCGCTGCCTCCAGCTGAGCGCAGGGAGCACTAGGTGCTGTACATGGTCAACGGCAAGGGCCACGCCTCCTGC
GACCACCTGCAGCGCGGCTTTGAGCACTGGGAGTGCAACTTGCCCACAGCGCCCAGGGGCCGCTCAAGTTCTCCGAGAAG
TTCCAGCTCTTCACGCCCTTCTCGCTGGGCTTCGAGTTCCGCCCGGGCCACGAGTATTACTACATCTCTGCCACACCACC
AATGCTGTTGACCGGCCCTGCCTTCGGCTAAAGGTTTATGTGCGGCCAACCAACGAGACCCTGTGTGAGGCCCCTGATCC
CATCTTCACCAGCAATAATTCGTGCAGTAGCCTGGACAGTTGTCAGCTCTTCCTCAGCACTGTCCCAGTACTCTGGACCC
TTTTGGGCTCC

Alignment

ORF - retro_mluc_2582 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 86.6 %
• Parental protein coverage: 89.3 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  PLARAEDASRANSDRYAVYWNRSNPRFHAGAADDRGGYTVEVSINDYLDIYCPHYGAPLPPAERMEHYVL
          P.A.A.DASRANSDRY.VYW.RSNPRFH..A.DDRGG.TV.VSINDYLDIYCP.YG.PLPPAER.EH.VL
Retrocopy PAATAKDASRANSDRYTVYWYRSNPRFHTSAGDDRGGCTV-VSINDYLDIYCPRYGTPLPPAERREH*VL

Parental  YMVNGEGHASCDHRQRGFKRWECNRPAAP-GGPLKFSEKFQLFTPFSLGFEFRPGHEYYYISATPP-NAV
          YMVNG.GHASCDH.QRGF..WECN.P.AP..GPLKFSEKFQLFTPFSLGFEFRPGHEYYYISATPP.NAV
Retrocopy YMVNGKGHASCDHLQRGFEHWECNLPTAP<QGPLKFSEKFQLFTPFSLGFEFRPGHEYYYISATPP<NAV

Parental  DRPCLRLKVYVRPTNETLYEAPEPIFTSNNSCSSLGSCQLFLSTVPVLWTLLGS
          DRPCLRLKVYVRPTNETL.EAP.PIFTSNNSCSSL.SCQLFLSTVPVLWTLLGS
Retrocopy DRPCLRLKVYVRPTNETLCEAPDPIFTSNNSCSSLDSCQLFLSTVPVLWTLLGS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2582 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000007874	3 retrocopies	retro_mluc_2582 , retro_mluc_2620, retro_mluc_426,