RetrogeneDB ID: retro_mluc_2620

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL432161:18151..18725(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000010860
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: EFNA2
• Ensembl ID: ENSMLUG00000007874
• Aliases: None
• Description: None

Sequence

>retro_mluc_2620
CCTGCCACCGCCGCCGAGGGTGCCTCCAGAGCCAACTCGGACCCCTACACAGTCTACTGGAACCGCAGCAACCCCAGGTT
CCACGCGGGTGCGGGGGACGACCATGGGGGCTGCACGGTGGAGGTGAGCATGAGTGACTACCTGGACATCTACTGCCGCG
CTACGGGGAGAAGCTGCCTCCAGCTGAGCTCATGGAGCACTACTTGCTGTACATGGTCAATGGCGAGGGCCACGCCTCCT
GCGACCACCAGCAGCACGGCTTCAAGCGCTGGGAGTGCAACATGCTCGCAGAGCCCGGGGGCCGCTCAAGTTCTCCGAGA
AGTTCCAGCTCTTCACGCCCTTCTCGCTGGGCTTCGAGTTCCGCCCGGGGCCACGAGTATTACTACATCTCTGCCACACC
ACCAATGCTGTTGACTGGCCCTGCCTTCGGCTAAAGGTTTATGTGCGGCCAACCAACGAGACCCTGTGTGAGGCCCCTGA
GCCCATCTTCACCAGCAATAATTCGTGCAGTAGCCTGGGCAGCTGTCAGCTCTTCCTCAGCACAGTCCCGGTACTCTGGA
CCCTTTTGGGCTCC

Alignment

ORF - retro_mluc_2620 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 86.22 %
• Parental protein coverage: 89.3 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 4

Retrocopy - Parental Gene Alignment:

Parental  PLARAEDASRANSDRYAVYWNRSNPRFHAGAADDRGGYTVEVSINDYLDIYC-PHYGAPLPPAERMEHYV
          P...AE.ASRANSD.Y.VYWNRSNPRFHAGA.DD.GG.TVEVS..DYLDIYC.P.YG..LPPAE.MEHY.
Retrocopy PATAAEGASRANSDPYTVYWNRSNPRFHAGAGDDHGGCTVEVSMSDYLDIYC<PRYGEKLPPAELMEHYL

Parental  LYMVNGEGHASCDHRQRGFKRWECNRPAAPGG-PLKFSEKFQLFTPFSLGFEFRPG-HEYYYISATPP-N
          LYMVNGEGHASCDH.Q.GFKRWECN..A.PGG.PLKFSEKFQLFTPFSLGFEFRPG.HEYYYISATPP.N
Retrocopy LYMVNGEGHASCDHQQHGFKRWECNMLAEPGG<PLKFSEKFQLFTPFSLGFEFRPG>HEYYYISATPP<N

Parental  AVDRPCLRLKVYVRPTNETLYEAPEPIFTSNNSCSSLGSCQLFLSTVPVLWTLLGS
          AVD.PCLRLKVYVRPTNETL.EAPEPIFTSNNSCSSLGSCQLFLSTVPVLWTLLGS
Retrocopy AVDWPCLRLKVYVRPTNETLCEAPEPIFTSNNSCSSLGSCQLFLSTVPVLWTLLGS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2620 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000007874	3 retrocopies	retro_mluc_2582, retro_mluc_2620 , retro_mluc_426,