RetrogeneDB ID: retro_mluc_291

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429959:1959772..1960369(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000025833
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000014721
• Aliases: None
• Description: None

Sequence

>retro_mluc_291
ATGGCGACTCCGTGGGGAGGCCTCCCGCGTCTCGGCTCCTTGCTCAGCCTGTCCTGCCTGGCGCTGGCGGTGCTGCTGCT
GGTGTGGACGGCCGACGCCGCCAAGAATTCGAAGGATGTTCCGTGTAAATGTATTTGTCCTCCCTATAAAGATATTCCTG
GACATATTTATAATAGGAACATATCCCAAAAAGATTGCGATTGCCTTCATGTTGTGGAGCTCATGTCTGTGAGGGAGCCT
GACATAGAAGCATACTGTCTGCGCTGTGAATGCAAATATGAGGAAAGAAGCTCTGTAACAATCAAGGTTACCGTTATAAT
TTACCTGTCCATTTTGGGTCTTCTACTTCTGTACATGGTGTACCTTACTCTGGTTGAGCCCATACTGAAGAGACGCCTGT
TTGGACACTCACAATTAATACAGAGTGATGATGATGTTGGGGATCACCAGCCATTTGCAAATGCCCACGATGTGCTGGCC
CGCTCCCGCACTCAAGCCAATGTGCTGAACAAGGTAGAGTATGCCCAGCAGCGCTGGAAGCTTCAAGTTCAAGAGCAGTG
GAAGTCGGCCTTTGACCGTCATGTTGTCCTCAGCTAA

Alignment

ORF - retro_mluc_291 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 94.44 %
• Parental protein coverage: 100.0 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MATPWGGLPRLGASLSLSCLALAVLLLVRTAAAAKNSEDVRCKCICPPYKDIPGHIYNRNISQKDCDCLH
          MATPWGGLPRLG..LSLSCLALAVLLLV.TA.AAKNS.DV.CKCICPPYKDIPGHIYNRNISQKDCDCLH
Retrocopy MATPWGGLPRLGSLLSLSCLALAVLLLVWTADAAKNSKDVPCKCICPPYKDIPGHIYNRNISQKDCDCLH

Parental  VVELMSVREPDIEAYCLRCECKYEERSSVTIKVTIIIYLSILGLLLLYMVYLTLVEPILKRRLFGHSQLI
          VVELMSVREPDIEAYCLRCECKYEERSSVTIKVT.IIYLSILGLLLLYMVYLTLVEPILKRRLFGHSQLI
Retrocopy VVELMSVREPDIEAYCLRCECKYEERSSVTIKVTVIIYLSILGLLLLYMVYLTLVEPILKRRLFGHSQLI

Parental  QSDDDVGDHQPFANAHDVLARSRSRANVLNKVEYAQQRWKLQVQEQRKSVFDRHVVLS
          QSDDDVGDHQPFANAHDVLARSR..ANVLNKVEYAQQRWKLQVQEQ.KS.FDRHVVLS
Retrocopy QSDDDVGDHQPFANAHDVLARSRTQANVLNKVEYAQQRWKLQVQEQWKSAFDRHVVLS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_291 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000014721	1 retrocopy	retro_mluc_291 ,
Macaca mulatta	ENSMMUG00000001998	1 retrocopy	retro_mmul_952,