RetrogeneDB ID: | retro_mmul_952 | ||
Retrocopy location | Organism: | Rhesus macaque (Macaca mulatta) | |
| Coordinates: | 12:56401243..56401699(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | TMEM9B | ||
| Ensembl ID: | ENSMMUG00000001998 | ||
| Aliases: | None | ||
| Description: | None |
Retrocopy-Parental alignment summary:
>retro_mmul_952
ATGGCGACCCTGTGGGGAGGCCTTCCTCGACTTGGCTCTTTGCTCAGCCTGTAGTGCCTGGCGCTGTCCGTGCTGCTGCT
GGCGCAGCTGTCAGACGCCGCCAGGAATTTCGAGGATGTCAGATGTAAATATATCTGCCCTCCCTATAAAGAAAATTCTG
GACATATTTATAATAAGAACATATCTCAGAAAGAGTGTGATTGCCTTCATGTTGTGGAGCCTATGCCTGTGCAGGGGCCT
GATGTAGAAGCATACTGTCTACTCTGTGAATGCAAATACAAAGAGAGAAGCTCTGTCACAATCAAGTTTACCATTATAAT
TTCTCTCTCCATTTTGGGCCTTCTACTTCAGTACATGGTATATCTTACTCTGGTTGAGCCCACACCGAAGAGGCGCCTCT
TTGGACACTCATAGTTGATACAGAGTGATGATGATATTGGGGATCACCAGCCTTTT
ORF - retro_mmul_952 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 73.03 % |
| Parental protein coverage: | 76.77 % |
| Number of stop codons detected: | 2 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | MATLWGGLLRLGSLLSLSCLALSVLLLAQLSDAAKNFEDVRCKCICPPYKENSGHIYNKNISQKDWKLLY |
| MATLWGGL.RLGSLLSL.CLALSVLLLAQLSDAA.NFEDVRCK.ICPPYKENSGHIYNKNISQK....L. | |
| Retrocopy | MATLWGGLPRLGSLLSL*CLALSVLLLAQLSDAARNFEDVRCKYICPPYKENSGHIYNKNISQKECDCLH |
| Parental | MIQECTQTGPYVIRPWLLVKISLETVEILTVLVTIIIYLSILGLLLLYMVYLTLVEPILKRRLFGHSQLI |
| ........GP.V....LL...........T...TIII.LSILGLLL.YMVYLTLVEP..KRRLFGHS.LI | |
| Retrocopy | VVEPMPVQGPDVEAYCLLCECKYKERSSVTIKFTIIISLSILGLLLQYMVYLTLVEPTPKRRLFGHS*LI |
| Parental | QSDDDIGDHQPF |
| QSDDDIGDHQPF | |
| Retrocopy | QSDDDIGDHQPF |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
| Library | Retrocopy expression | Parental gene expression |
|---|---|---|
| SRP007412_brain | 0 .34 RPM | 13 .22 RPM |
| SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 14 .44 RPM |
| SRP007412_cerebellum | 0 .39 RPM | 11 .82 RPM |
| SRP007412_heart | 0 .12 RPM | 6 .36 RPM |
| SRP007412_kidney | 0 .23 RPM | 13 .15 RPM |
| SRP007412_liver | 0 .08 RPM | 7 .09 RPM |
| SRP007412_testis | 0 .08 RPM | 6 .86 RPM |
Macaca mulatta was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mmul_952 retrocopy.
Macaca mulatta was not studied using FANTOM5 data.
retro_mmul_952 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_mmul_952 has 0 orthologous retrocopies within eutheria group .Parental genes homology:
Parental genes homology involve 2 parental genes, and 2 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Myotis lucifugus | ENSMLUG00000014721 | 1 retrocopy | |
| Macaca mulatta | ENSMMUG00000001998 | 1 retrocopy |
retro_mmul_952 ,
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