RetrogeneDB ID: retro_mluc_298

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430110:220702..221275(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000013224
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000004794
• Aliases: None
• Description: None

Sequence

>retro_mluc_298
ATGGAAGCAGAAACCAAAACTCTTCCCCTGGAGAACGCATCCATCCTATCAGAGGGTTCCCTACAGGAAGGGCACCGGTT
ATGGATTGGCAACCTGGACCCCAAAATCACAGAATACCACCTCCTGAAGCTCCTCCAGAAGTTTGGCACGGTAAAGCAGT
TTGACTTCCTTTTCCACAAGTCAGGTGCTTTGGAGGGACAGCCCAGAGGGTACTGTTTCGTTAACTTTGAAACCAAGCAG
GAAGCAGAACAAGCCATCCAGTGTCTCAATGGCAAGCTGGCTCTGTCTAAGAAGCTGGTGGTGCGATGGGCCCATGCTCA
AGTCAAGAGATATGATCATAACAAGAATGATAAGATCCTTCCAATCAGCCTTGAGCCATCCTCTAGCACTGAGCCCACGC
AATCTAACCTAAGCGTCACTGCAAAGATAAAAGCCATTGAAGCAAAGCTGAAAATGATGGCAGAAAATCCCGATGCCGAG
TACCCAGCAGCGCCTGTTTATTCCTACTTTAAGCCACCAGATAAAAAAAGGACTACTCCTTATTCTAGAACAGCATGGAA
ATCTCGAAGATGA

Alignment

ORF - retro_mluc_298 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 100.0 %
• Parental protein coverage: 100.0 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MEAETKTLPLENASILSEGSLQEGHRLWIGNLDPKITEYHLLKLLQKFGTVKQFDFLFHKSGALEGQPRG
          MEAETKTLPLENASILSEGSLQEGHRLWIGNLDPKITEYHLLKLLQKFGTVKQFDFLFHKSGALEGQPRG
Retrocopy MEAETKTLPLENASILSEGSLQEGHRLWIGNLDPKITEYHLLKLLQKFGTVKQFDFLFHKSGALEGQPRG

Parental  YCFVNFETKQEAEQAIQCLNGKLALSKKLVVRWAHAQVKRYDHNKNDKILPISLEPSSSTEPTQSNLSVT
          YCFVNFETKQEAEQAIQCLNGKLALSKKLVVRWAHAQVKRYDHNKNDKILPISLEPSSSTEPTQSNLSVT
Retrocopy YCFVNFETKQEAEQAIQCLNGKLALSKKLVVRWAHAQVKRYDHNKNDKILPISLEPSSSTEPTQSNLSVT

Parental  AKIKAIEAKLKMMAENPDAEYPAAPVYSYFKPPDKKRTTPYSRTAWKSRR
          AKIKAIEAKLKMMAENPDAEYPAAPVYSYFKPPDKKRTTPYSRTAWKSRR
Retrocopy AKIKAIEAKLKMMAENPDAEYPAAPVYSYFKPPDKKRTTPYSRTAWKSRR

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_298 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 8 parental genes, and 9 retrocopies.

Species	Parental gene accession	Retrocopies number
Cavia porcellus	ENSCPOG00000013811	1 retrocopy	retro_cpor_237,
Myotis lucifugus	ENSMLUG00000004794	1 retrocopy	retro_mluc_298 ,
Monodelphis domestica	ENSMODG00000019688	1 retrocopy	retro_mdom_1462,
Oryctolagus cuniculus	ENSOCUG00000008527	1 retrocopy	retro_ocun_290,
Otolemur garnettii	ENSOGAG00000015104	1 retrocopy	retro_ogar_846,
Ochotona princeps	ENSOPRG00000010381	2 retrocopies	retro_opri_1123, retro_opri_360,
Ictidomys tridecemlineatus	ENSSTOG00000022388	1 retrocopy	retro_itri_1882,
Tupaia belangeri	ENSTBEG00000016520	1 retrocopy	retro_tbel_2898,