RetrogeneDB ID: retro_mluc_638

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429769:17580141..17581658(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000004806
• Aliases: None
• Description: None

Sequence

>retro_mluc_638
GACTATACCCAGAAAGCAACCCAAAGCTATGGGGCCTACCCCACCTAGCCTGGGCAGGTTTATTCCCAGCAGAACAACCA
GCCCTATGGACAACAGAGTTACGGTGGCTACAGCCAGTCCGGGAGCACTTCAGGCTATGGCCAGAGCACCTATGGCTCTT
ATGGACAGACCCAGGACACAGGCTAGGGTACTCAGTCAGCTCCCCAGGGATATGGCTCAAACGGTGGCTATGGCGGTGGT
CAGAGTTCTCAGTCATCTTATGGGCAGCAGTTTTACCCTGGCTATGCCAGCAGCCGGCTCCTAGCAGCACCTCAGGAAGT
TACAGTAGCAGTTCTCAGAGCAGCAACTTTGCGCCAGCCCCGAGTGGGGGCTATGGTCAGCAGTCTAGCTATGGTGGACA
GCTGCCAGCTAAGGACAGCAGAAAAGCTCCTAGAATCCTCCTCAGGGCTACGGACAACAGAACCAGTACAACAGTAGCAG
TGGCAGAGGGGGTGGTGGAGGTAATTATGGCCAAGATCAGTCCTCCGTGAGTGGTGGCAGCAGTGGCAGCATTTATGGCA
ATCAGGACCAAAGTGGTGATGGTGGCAGAGGCTATGGGGGAGACCAGCAAGACCGTGGGGGACAAGGCTGGGGTGGTGGC
GGTGGTTACAACTGCAGCAGTGGTGGCTATGAATCCAGAGGTCTTGGAGGTGGCCACGGAGGTCGAGGGGCATGGGCAGA
AGTAACCTTGGTGGTTGCAATAAATTTGGTGGCCCTCAGGACCAAGGATCTTGTCATGACTCTGAACAGGATAATTCAGA
CAACAATACCATCTTCATGCAAGGCCTGGGTGAGAATGTTACAATTGAGTGTGTGGCTGATCACTTCGAGCAGAATGGTA
TTATTAAGACAAACTAAAAACAGGATAACCATGTTTAATCTGTACACAGACAAGGAACGGAGCAAGCTGAAGGGAGAGGC
AATGGTATCATTTGATGACCCACCTTCTGCTAAAGCAGCTATTGACTGGTTTGATGGTAAAGAATTATCTGGGAATTCTA
TCAAGGTTTCATTTGCTACTTGGCGTGCATATTTTAATCGAGGTGGTAGCAGTGGTCATGGAGGCCAAGGACAAGGAGGA
CCCATGGGCCGTGGAGGTTATGTAGGTGGTGGCAGTGGTGGCGGTGGCCGAGGAGGATTCCCAAATGGAGGTGGTGGCGG
CAGTGGAGGACAGCAGAGCTGGGGACTGGAAGTGTCCTGTGAGAACATGGACTTCTCTTAGAGGAATGAATGCAACCATG
TAAGGCCCCTAAACCAAATGGTCTAGGACAGGGACCAGGAGGCTCTCATATGGGGGATAGCTATGGAGATGATCATTGTG
GAGGCAGAAGAAGCTATGATCAGGGTGGCTATGGAGGCCATGACGGGGACCGTGGGGGCTTCCAAGGGGCCGGGGTGCTG
GGGACAGAGGTGGCTTTGTCCCTGGCAAGATGGACTCCAGGGGTGACCACAGACAGGATCACAGGGAGAGGCCATAT

Alignment

ORF - retro_mluc_638 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 79.23 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 6
• Number of frameshifts detected: 7

Retrocopy - Parental Gene Alignment:

Parental  DYTQQATQSYGAYPTQPGQGYSQQSSQPYGQQSYGGYSQSGDTSGYGQSTYGSYGQTQNTGYGTQSAPQG
          DYTQ.ATQSYGAYPT.PGQ.YSQQ..QPYGQQSYGGYSQSG.TSGYGQSTYGSYGQTQ.TG.GTQSAPQG
Retrocopy DYTQKATQSYGAYPT*PGQVYSQQNNQPYGQQSYGGYSQSGSTSGYGQSTYGSYGQTQDTG*GTQSAPQG

Parental  YGSTGGYGGGQSSQSSYGQQSYPGYG-QQPAPSSTSGSYGSSSQSSNYGQPPSGGYGQQSGYGGQQP-SY
          YGS.GGYGGGQSSQSSYGQQ.YPGY..QQPAPSSTSGSY.SSSQSSN....PSGGYGQQS.YGGQ.P.S.
Retrocopy YGSNGGYGGGQSSQSSYGQQFYPGYA<QQPAPSSTSGSYSSSSQSSNFAPAPSGGYGQQSSYGGQLP<S*

Parental  GQQQSSYNPPQGYGQQNQYNSSSGGGGGGGGGNYGQDQSSMSGGSGG--YGNQDQSGGGG--YGGGQQDR
          GQQ.SS.NPPQGYGQQNQYNSSSG.GGGGG..NYGQDQSS.SGGS.G..YGNQDQSG.GG..YGG.QQDR
Retrocopy GQQKSS*NPPQGYGQQNQYNSSSGRGGGGG--NYGQDQSSVSGGSSGSIYGNQDQSGDGGRGYGGDQQDR

Parental  GGRGRGGGGGYNRSSGGYEPRGRGGGRGGRG-GMGGSDRGGFNKFGGPRDQGSRHDSEQDNSDNNTIFVQ
          GG.G.GGGGGYN.SSGGYE.RG.GGG.GGRG.GMG.S..GG.NKFGGP.DQGS.HDSEQDNSDNNTIF.Q
Retrocopy GGQGWGGGGGYNCSSGGYESRGLGGGHGGRG<GMGRSNLGGCNKFGGPQDQGSCHDSEQDNSDNNTIFMQ

Parental  GLGENVTIESVADYFKQIGIIKTN-KKTGQP-MINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE
          GLGENVTIE.VAD.F.Q.GIIKTN..KTG.P.M.NLYTD.E..KLKGEA.VSFDDPPSAKAAIDWFDGKE
Retrocopy GLGENVTIECVADHFEQNGIIKTN<LKTG*P<MFNLYTDKERSKLKGEAMVSFDDPPSAKAAIDWFDGKE

Parental  FSGNPIKVSFATRRADFNRGGGNGRGGRGRGGPMGRGGYGGGGSGGGGRGGFPSGGGGGGGQQRAGDWKC
          .SGN.IKVSFAT.RA.FNRGG..G.GG.G.GGPMGRGGY.GGGSGGGGRGGFP.GGG..GG......W..
Retrocopy LSGNSIKVSFATWRAYFNRGGSSGHGGQGQGGPMGRGGYVGGGSGGGGRGGFPNGGG--GGSGGQQSWGL

Parental  PNPTCENMNFSWRNECNQ-CKAPKPDGPGGGPGGSHMGKNYGDDRRGGRGGYDRGGYRGRGGDRGGFRG-
          ....CENM.FS.RNECN..CKAPKP.G.G.GPGGSHMG..YGDD..GGR..YD.GGY.G..GDRGGF.G.
Retrocopy -EVSCENMDFS*RNECNH<CKAPKPNGLGQGPGGSHMGDSYGDDHCGGRRSYDQGGYGGHDGDRGGFQG<

Parental  GRGGGDRGGFGPGKMDSRGDHRQDRRERPY
          GRG.GDRGGF.PGKMDSRGDHRQD.RERPY
Retrocopy GRGAGDRGGFVPGKMDSRGDHRQDHRERPY

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_638 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 6 parental genes, and 12 retrocopies.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000000968	1 retrocopy	retro_meug_1986,
Myotis lucifugus	ENSMLUG00000004806	3 retrocopies	retro_mluc_1934, retro_mluc_608, retro_mluc_638 ,
Myotis lucifugus	ENSMLUG00000012058	1 retrocopy	retro_mluc_328,
Macaca mulatta	ENSMMUG00000019637	1 retrocopy	retro_mmul_153,
Mus musculus	ENSMUSG00000030795	2 retrocopies	retro_mmus_2710, retro_mmus_2952,
Rattus norvegicus	ENSRNOG00000023360	4 retrocopies	retro_rnor_1439, retro_rnor_2727, retro_rnor_2894, retro_rnor_913,