RetrogeneDB ID: retro_mluc_771

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429774:12779557..12780535(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000027163
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: MRPS27
• Ensembl ID: ENSMLUG00000007355
• Aliases: None
• Description: None

Sequence

>retro_mluc_771
TATTACCTTTACAAATTCCGGCACAGCCCCAATTGCTGGTACCTGAGAGACTGGACTATCCACACCTGGATTAGGCAGTG
TCTAAAATATGGTGCACAAGACAAGGCCTTATATACCCTTGTAAATAAGGTTCAATATGGAATTTTCCCAGATAACTTTA
CATTCAATTTACTGATAGATTATTTCATAAAGAAAGAAAATTACCAAGATGCTTTATCCGTGGTTTTTGAGGTCATGATG
CAAGAAGCCTTTGAAGTACCTTCCACCCAGCTTCTCTCCCTCTATGTTTTATACCACTGCCTGGCAAAGAAGACAGACTT
CACTTGGGAAGAGGAGAGGAACTTCGGTGCATCCCTGTTACTCCCAGGCCTAAAGCAAAAGAACTCAGTGGGTTTGAGTT
CCCAGCTGTATGGCTATGCACTTCTGGGGAAGGTGGAATTGCAGCGAGGGCTGTGGGCTGTGTACCACAACATGCCTCTC
CTGTGTCCACCAGGCTACCTTGACAGAGCCCTCCAGGTGATGGAGAAGGTGGCCTCCTCCCCAGAAGATGGAAAGCTATG
TAGAGAAGCGCTCGACGTTCTGGACAGAGCACTGCAGGCTCTGATGACTCCAGCCCAGAAGTCCTCAGAGGAACAGCCCC
AAGGAGGGGAGGACAGCCAGGGCCCAGAAGAGCTGGTGGAGCAGTTGGACGTGGAGGAAACCGAACAGTCCAAGCTTCCC
CCCTACCTGGAGCGATTTAAGGCCTTACATTCCCAGCTTCAGGCTCTGGGCAAAGTTGAGTCAGAGAGTCTTTTGACTCT
AACCACCTAGCTCATCAAAGACCAGCTGCCTGCCTGTGAAGCAGAGGACATCGCCACCTACGAGCAGAAGTTGCAGCAGT
GGCATCGGGATTTGTTGTACTTGATTCAGCGGGAACAGGAGTTCAGGGAGAAGGCAAAGCAGGAGCACCTGGCTCGGGAA
GCAGCAAAGGCGGCTGCC

Alignment

ORF - retro_mluc_771 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 95.09 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  YALFRFRHSPNCWYLRDWTIHTWIRQCLKYGAQDKALYTLVNKVQYGIFPDNFTFNLLIDYFIKKENYQD
          Y.L..FRHSPNCWYLRDWTIHTWIRQCLKYGAQDKALYTLVNKVQYGIFPDNFTFNLLIDYFIKKENYQD
Retrocopy YYLYKFRHSPNCWYLRDWTIHTWIRQCLKYGAQDKALYTLVNKVQYGIFPDNFTFNLLIDYFIKKENYQD

Parental  ALSVVFEVMMQEAFEVPSTQLLSLYVLYHCLAKKTDFTWEEERNFGASLLLPGLKQKNSVGLSSQLYGYA
          ALSVVFEVMMQEAFEVPSTQLLSLYVLYHCLAKKTDFTWEEERNFGASLLLPGLKQKNSVGLSSQLYGYA
Retrocopy ALSVVFEVMMQEAFEVPSTQLLSLYVLYHCLAKKTDFTWEEERNFGASLLLPGLKQKNSVGLSSQLYGYA

Parental  LLGKVELQRGLRAVYHDMPLLWRPGYLDRALQVMEKVASSPEDGKLCREALDVLDRALQALTAPAQESSE
          LLGKVELQRGL.AVYH.MPLL..PGYLDRALQVMEKVASSPEDGKLCREALDVLDRALQAL..PAQ.SSE
Retrocopy LLGKVELQRGLWAVYHNMPLLCPPGYLDRALQVMEKVASSPEDGKLCREALDVLDRALQALMTPAQKSSE

Parental  EQPQGGEDSQGPEELVEQLDVEETEQSKLPRYLERFKALHSQLQALGKVESENLLTLTTQLIKDQLPACE
          EQPQGGEDSQGPEELVEQLDVEETEQSKLP.YLERFKALHSQLQALGKVESE.LLTLTT.LIKDQLPACE
Retrocopy EQPQGGEDSQGPEELVEQLDVEETEQSKLPPYLERFKALHSQLQALGKVESESLLTLTT*LIKDQLPACE

Parental  AEDIATYKQKLQQWHRDLLYLIQREQEFREKAKQEHLAQQAAKAAA
          AEDIATY.QKLQQWHRDLLYLIQREQEFREKAKQEHLA..AAKAAA
Retrocopy AEDIATYEQKLQQWHRDLLYLIQREQEFREKAKQEHLAREAAKAAA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_771 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Choloepus hoffmanni	ENSCHOG00000002565	1 retrocopy	retro_chof_2697,
Myotis lucifugus	ENSMLUG00000007355	1 retrocopy	retro_mluc_771 ,
Sus scrofa	ENSSSCG00000023818	2 retrocopies	retro_sscr_231, retro_sscr_251,