Parental gene: | MRPS27, ENSSSCG00000023818 |
| Aliases: | None |
| Description: | mitochondrial ribosomal protein S27 [Source:HGNC Symbol;Acc:14512] |
| Organism: | Pig (Sus scrofa) |
| Coordinates: | 16:52497269..52593611(-) |
>ENSSSCG00000023818
ATGGATAAAACATATGAGAGAAAGTTGCCTGTTAGTTCTTTAACAATATCACGGTTTGTGGACAACATTGCATCTCGAGA
AGATATAGACCACGCGGAGTATTATCTTTACAAATTTCGACACAGCCCCAACTGCTGGTACTTGAGAGATTGGACTATCC
ACACGTGGATTAGGCAGTGTCTAAAATATGGTGCACAGGACAAAGCCTTATACACCCTTAAAAATAAGGTCCAATATGGC
ATTTTCCCAGATAACTATACATTTAACTTACTGATGGATTATTTCATAAAGAAAGAAAATTACAAAGATGCTTTATCCGT
GGTTTTTGAGATCATGATGCAAGAAGCTTTTGAAGTCCCTTCCACCCAGCTCCTCTCCCTCTATGTTTTGTACCACTGCC
TTGCAGAGAAGACAGACTTGAGTTGGGAAGAGGAGAGGAACTTTGGTGCATCCCTGTTACTCCCAGGTCTAAAGCAAAAG
AACTCAGTGGGGCTGAGTTCCCAGCTGTATGGCTATGCACTTCTTGGGAAGGTAGAATTGCAGCAAGGGCTGAGGGCTGT
GTACTGCAACATGCCGCTGCTCTGGCAACCAGGCTACCTCCACAGAGCCCTTCAAGTGATGGAGAAGGTGGCCTCCTCCC
CAGAAGATGGACAGCTGTGTGGAGAAGCGCTCGATGTGCTGGACAGAGTGCTGAAGGCTGTGACTGCTCCGGCCCAGGGG
ACTTCAGAGGAACAGCCCCAGGAAGGTGAGGAAAGCCAGAGGTCAGAAGAACTGGTAGAGCAGTTGGATGTGGAGGAAAC
TGAACAGTCCAAGCTTCCTCAGTACCTGGAACGATTTGAGGCTTTACGTTCTAAGCTGCAGGCTCTGGGCAAAGTGGAGT
CAGAAAGCCTGCTGACCCTGAGCACCCAGCTCGCCAAGGCCCAGCTCCCCACCTGTGAAGCGGAAGACATCGCCGTCTAT
GAGCAGAGGCTGCAGCAGTGGCACGGGGAGCGCGTACGTTTGATCCAGAGAGAACAAGAGCAGAGGGAGAGGGCGAGGCA
GGATTACGAGGCTCGGAGAGCAGCCAAGGCATCTGCCTAA
ATGGATAAAACATATGAGAGAAAGTTGCCTGTTAGTTCTTTAACAATATCACGGTTTGTGGACAACATTGCATCTCGAGA
AGATATAGACCACGCGGAGTATTATCTTTACAAATTTCGACACAGCCCCAACTGCTGGTACTTGAGAGATTGGACTATCC
ACACGTGGATTAGGCAGTGTCTAAAATATGGTGCACAGGACAAAGCCTTATACACCCTTAAAAATAAGGTCCAATATGGC
ATTTTCCCAGATAACTATACATTTAACTTACTGATGGATTATTTCATAAAGAAAGAAAATTACAAAGATGCTTTATCCGT
GGTTTTTGAGATCATGATGCAAGAAGCTTTTGAAGTCCCTTCCACCCAGCTCCTCTCCCTCTATGTTTTGTACCACTGCC
TTGCAGAGAAGACAGACTTGAGTTGGGAAGAGGAGAGGAACTTTGGTGCATCCCTGTTACTCCCAGGTCTAAAGCAAAAG
AACTCAGTGGGGCTGAGTTCCCAGCTGTATGGCTATGCACTTCTTGGGAAGGTAGAATTGCAGCAAGGGCTGAGGGCTGT
GTACTGCAACATGCCGCTGCTCTGGCAACCAGGCTACCTCCACAGAGCCCTTCAAGTGATGGAGAAGGTGGCCTCCTCCC
CAGAAGATGGACAGCTGTGTGGAGAAGCGCTCGATGTGCTGGACAGAGTGCTGAAGGCTGTGACTGCTCCGGCCCAGGGG
ACTTCAGAGGAACAGCCCCAGGAAGGTGAGGAAAGCCAGAGGTCAGAAGAACTGGTAGAGCAGTTGGATGTGGAGGAAAC
TGAACAGTCCAAGCTTCCTCAGTACCTGGAACGATTTGAGGCTTTACGTTCTAAGCTGCAGGCTCTGGGCAAAGTGGAGT
CAGAAAGCCTGCTGACCCTGAGCACCCAGCTCGCCAAGGCCCAGCTCCCCACCTGTGAAGCGGAAGACATCGCCGTCTAT
GAGCAGAGGCTGCAGCAGTGGCACGGGGAGCGCGTACGTTTGATCCAGAGAGAACAAGAGCAGAGGGAGAGGGCGAGGCA
GGATTACGAGGCTCGGAGAGCAGCCAAGGCATCTGCCTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP014902_placenta | 11 .02 RPM |
| SRP014902_testis | 43 .57 RPM |
| SRP018856_adipose | 27 .86 RPM |
| SRP018288_kidney | 38 .91 RPM |
| SRP018288_lung | 19 .14 RPM |
| SRP018288_liver | 108 .26 RPM |
| SRP018288_heart | 56 .79 RPM |
| SRP035408_liver | 100 .19 RPM |
| SRP035408_brain | 28 .77 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Choloepus hoffmanni | ENSCHOG00000002565 | ortholog_one2one | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000007355 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_sscr_231 | 86.96 | 76.04 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_sscr_251 | 87.27 | 76.04 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSSSCG00000023818 retrocopies