RetrogeneDB ID: | retro_mluc_926 | ||
Retrocopylocation | Organism: | Microbat (Myotis lucifugus) | |
Coordinates: | GL429783:1900111..1900532(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PSMA5 | ||
Ensembl ID: | ENSMLUG00000008497 | ||
Aliases: | None | ||
Description: | Proteasome subunit alpha type [Source:UniProtKB/TrEMBL;Acc:G1PBK8] |
Percent Identity: | 73.33 % |
Parental protein coverage: | 59.92 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 2 |
Parental | TLIDKARVETQNHWFTYNETMTVESVTQSVTQAVSNLALQFGEEDADPGAMSRPFGVALL-FGGVDEKGP |
T.I.KARVET.NH..TYN.TMTV.SVTQ....AVSNLAL.FG.E.AD.GAMSRP.G.ALL..GGVDEKGP | |
Retrocopy | TVIEKARVETRNH*LTYN*TMTV-SVTQ----AVSNLALPFG-EGADLGAMSRPCGGALL<IGGVDEKGP |
Parental | QLFHM-DPSGTFVQCDARAIGSASEGAQSSLQEVYHKSMTLKEAIKSSLIILKQVMEEKLNATNIELATV |
.LFH...PSGTFVQ.DA.A.GSAS.GAQSSLQ.VYHK.MTLKEAI.SSLI.LKQ.MEEKLNA.N.E.A.V | |
Retrocopy | PLFHR<GPSGTFVQ*DA*AVGSASKGAQSSLQ-VYHKPMTLKEAITSSLILLKQAMEEKLNAINTERAAV |
Parental | QPGQNFHMFT |
QPGQ....FT | |
Retrocopy | QPGQTVPRFT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Myotis lucifugus | ENSMLUG00000008497 | 2 retrocopies |
retro_mluc_1002, retro_mluc_926 ,
|
Mustela putorius furo | ENSMPUG00000003189 | 1 retrocopy | |
Mus musculus | ENSMUSG00000068749 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000013560 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000008908 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000006830 | 2 retrocopies |