RetrogeneDB ID: | retro_mputfur_1295 | ||
Retrocopylocation | Organism: | Ferret (Mustela putorius furo) | |
Coordinates: | GL897071.1:3040310..3040856(+) | ||
Located in intron of: | ENSMPUG00000002743 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PSMA5 | ||
Ensembl ID: | ENSMPUG00000003189 | ||
Aliases: | None | ||
Description: | proteasome (prosome, macropain) subunit, alpha type, 5 [Source:HGNC Symbol;Acc:9534] |
Percent Identity: | 96.15 % |
Parental protein coverage: | 75.52 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MFLTRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGIQTSEGVCLAVEKRITSPLMEPSSIEKIVEI |
MFL.RSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGIQTSEGVCLAVEKRITSPLMEPSSIEKIVEI | |
Retrocopy | MFLARSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGIQTSEGVCLAVEKRITSPLMEPSSIEKIVEI |
Parental | DAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVA |
DAHIGCAMSGLIADAKTLIDKARVETQN.WFTYNETMTVESVTQAVSNLALQFGEEDADPG.MS.PFGVA | |
Retrocopy | DAHIGCAMSGLIADAKTLIDKARVETQNYWFTYNETMTVESVTQAVSNLALQFGEEDADPGVMSCPFGVA |
Parental | LLFGGVDEKGPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQ |
LLFGGVDEKGP.LFHMDPSGTFVQCDA.AIGSASEGAQSSL. | |
Retrocopy | LLFGGVDEKGPLLFHMDPSGTFVQCDA*AIGSASEGAQSSLK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Myotis lucifugus | ENSMLUG00000008497 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000003189 | 1 retrocopy |
retro_mputfur_1295 ,
|
Mus musculus | ENSMUSG00000068749 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000013560 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000008908 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000006830 | 2 retrocopies |