>retro_mmul_1000
ATGAATTACGTAGAGAAGTATGGCATGAAGTGCGAAGGCATCTATAGGGTATCAGGAATTAAATCAAAGGTGGATGAGCT
AAAAGCAGCCTATGACCAGGAGGAGTCTACAAACTGGGAAGAATATGAGCCTCACACTGTAGCCAGTTTGCAGAGGCAGT
ATTTGCGAGACCTTCCAGAGAATTTGCTTACCAAAGAGCTTATGCCCAGATTTGAAGAGGCTTGTGGGAGGACCACGGAG
ACTGAGAAAGTGCAGGAATTCCAGCGTTTACTCAAAGAACTGCCAGAAGGTAACTGTCTTCTGATTTCTTGGCTCATTGT
GCACAAGGGCCATCTCATCGCAAAGGAACTGGAAACAAAAATGAATATGCAGAACATTTCTGTAGTGCTCAGCCGAACTG
TGCAGATCAGCAATCTAGTCCTGTATGTGTTTTTCACACATGTGCAAGAACTCTTTGGAAATGTGGTACTAAACAAGTGA
CAAAACCTTGGCAATGGTCTAACATGGCCATGATGCCCACACTGCCAGAGACCCAGACAGGCAACGAGGAGGAGATCAGG
AGACAGGAGTTGCTTTTGAATTGTTTACATCAAGATCTGCAGGGTGGGATAAAGGATTTGTCTAAAGAAGAAAGATTATG
GGAAGTACAAAGAATTTTGACAGCTCTCAAAAGACAACTGAGAGAAGCTGAAAGACAGGAGTGTGAAACCAAGATTGCAC
AAGAGATAGCCCGTCTTTCAAAAGAGGCTGTTTCCAAAAAAGAAATGAATGAAAATGAAGAAGTTATAAATATTCTCCTT
GTTCAGGAGAAAGAGATCCTGACTGAACAGGAGGAGGTCCTGGCCATGGAGCAGTTTCTGTGCCAGCAGATTGCCTCAGA
AAAAGAAGAGATTGCAGAAATTCAGAGTCGCCAGCAGCAGGGCTTAAGCAAGACTGAGGAGTACTCCTCCAAGAGCGACA
GTGAGGATGAGGAGGAGCCGCAGATCACTCTGGAAGATTTACAGAGACAGAACGAAGAGGTGGAAATAAAGAACGATCAT
TTGAATCAAGCAATTCACAAGGAGCGTGAGGCCATCATCGAGCAGTTCCAGCTGCTCCAGATGCAGCCAGCCACGGCCGA
GCAGCAGGCGCAGGAGGACGAGGAGCCCGAGTGGCGCACAGGTGCTGTCGAGCCGCCCAGAGACGGCGTCCTCGAGCCG
ORF - retro_mmul_1000 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
69.88 % |
Parental protein coverage: |
61.62 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
1 |
Retrocopy - Parental Gene Alignment:
Parental | IDYVEKYGMKCEGIYRVSGIKSKVDELKAAYDREESTNLEEYEPNTVASLLKQYLRDLPENLLTKELMPR |
| ..YVEKYGMKCEGIYRVSGIKSKVDELKAAYD.EESTN.EEYEP.TVASL..QYLRDLPENLLTKELMPR |
Retrocopy | MNYVEKYGMKCEGIYRVSGIKSKVDELKAAYDQEESTNWEEYEPHTVASLQRQYLRDLPENLLTKELMPR |
|
Parental | FEEACGRTTETEKVQEFQRLLKELPECNYLLISWLIVHMDHVIAKELETKMNIQNISIVLP-TVQISNRV |
| FEEACGRTTETEKVQEFQRLLKELPE.N.LLISWLIVH..H.IAKELETKMN.QNIS.VL..TVQISN.V |
Retrocopy | FEEACGRTTETEKVQEFQRLLKELPEGNCLLISWLIVHKGHLIAKELETKMNMQNISVVLSRTVQISNLV |
|
Parental | LYVFFTHVQELFGNVVL-KQVTKPLRWSNMATMPTLPETQAGIKEEIRRQEFLLNCLHRDLQGGIKDLSK |
| LYVFFTHVQELFGNVVL.KQVTKP..WSNMA.MPTLPETQ.G..EEIRRQE.LLNCLH.DLQGGIKDLSK |
Retrocopy | LYVFFTHVQELFGNVVL<KQVTKPWQWSNMAMMPTLPETQTGNEEEIRRQELLLNCLHQDLQGGIKDLSK |
|
Parental | EERLWEVQRILTALKRKLREAKRQECETKIAQEIASLSKEDVSKEEMNENEEVINILLAQENEILTEQEE |
| EERLWEVQRILTALKR.LREA.RQECETKIAQEIA.LSKE.VSK.EMNENEEVINILL.QE.EILTEQEE |
Retrocopy | EERLWEVQRILTALKRQLREAERQECETKIAQEIARLSKEAVSKKEMNENEEVINILLVQEKEILTEQEE |
|
Parental | LLAMEQFLRRQIASEKEEIERLRAEIAEIQSRQQHGRSETEEYSSESESESEDEEELQIILEDLQRQNEE |
| .LAMEQFL..QIASEKEEI...........S......S.....S...E......E.LQ...E.....N.. |
Retrocopy | VLAMEQFLCQQIASEKEEIAEIQSRQQQGLSKTEEYSSKSD--SEDEEEPQITLEDLQRQNEEVEIKNDH |
|
Parental | LEIKNNHLNQAIHEEREAIIELRVQLRLLQMQRAKAEQQAQEDQEPEWRGGAVQP |
| L.........AI.E...............Q.Q............EP..R.G...P |
Retrocopy | LNQAIHKEREAIIEQFQ-LLQMQPATAEQQAQEDEEPEWRTGAVEPP-RDGVLEP |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP007412_brain |
0 .22 RPM |
55 .24 RPM |
SRP007412_brain_prefrontal_cortex |
0 .24 RPM |
88 .85 RPM |
SRP007412_cerebellum |
0 .26 RPM |
44 .10 RPM |
SRP007412_heart |
0 .12 RPM |
39 .75 RPM |
SRP007412_kidney |
0 .00 RPM |
43 .78 RPM |
SRP007412_liver |
0 .00 RPM |
16 .86 RPM |
SRP007412_testis |
0 .23 RPM |
11 .50 RPM |
Macaca mulatta was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mmul_1000 retrocopy.
Macaca mulatta was not studied using FANTOM5 data.
retro_mmul_1000 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_mmul_1000 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
6 parental genes, and
10 retrocopies.