RetrogeneDB ID: | retro_mmul_1528 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 2:106436465..106437932(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RALBP1 | ||
Ensembl ID: | ENSMMUG00000019521 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 83.71 % |
Parental protein coverage: | 73.85 % |
Number of stop codons detected: | 7 |
Number of frameshifts detected | 2 |
Parental | PIQEPEVPQIDVPNLKPIFGIPLADAVERTMMYDGIRLPAVFRECIDYVEKYGMKCEGIYRVSGIKSKVD |
PIQEPEVP.IDVPNLKPIFGIPLADA.ERTMMYDGI.L..VFRECID..E.YGMKCEGIYRVSGIKSKVD | |
Retrocopy | PIQEPEVPPIDVPNLKPIFGIPLADAIERTMMYDGIWLLVVFRECIDCLEMYGMKCEGIYRVSGIKSKVD |
Parental | ELKAAYDREESTNLEEYEPNTVASLLKQYLRDLPENLL-TKELMPRFEEACGRTTETEKVQEFQRLLKEL |
.LKAAYD.EEST.LEEYEPNTVASLLKQYL..LPENLL.TKELM.RFEEA..RTTETEKV.E.Q.L.K.L | |
Retrocopy | KLKAAYDQEESTSLEEYEPNTVASLLKQYL*ELPENLL>TKELMLRFEEAYRRTTETEKVHEYQHLFK*L |
Parental | PECNYLLISWLIVHMDHVIAKELETKMNIQNISIVL-PTVQISNRVLYVFFTHVQELFGNVVLKQVTKPL |
PECNYLLISWLIVHMDHVI..ELETKMNIQNISIVL.PTVQISN.V..VFFTHVQELFGN.VLKQVTKPL | |
Retrocopy | PECNYLLISWLIVHMDHVITNELETKMNIQNISIVLSPTVQISNGVPHVFFTHVQELFGNAVLKQVTKPL |
Parental | RWSNMATMPTLPETQAGIKEEIRRQEFLLNCLHRDLQGGIKDLSKEERLWEVQRILTALKRKLREAKRQE |
RWSNMATMP.LPETQAGIKEE.RRQ.FLLNCL...LQGG.KDLSKEERLW.VQRILTALKRKLRE..RQE | |
Retrocopy | RWSNMATMPMLPETQAGIKEEMRRQGFLLNCLYQYLQGGKKDLSKEERLWKVQRILTALKRKLREI*RQE |
Parental | CETKIAQEIASLSKEDVSKEEMNENEEVINILLAQENEILTEQEELLAMEQFLRRQIASEKEEIE--RLR |
CETKIAQEIASL.KE.VSKEEMNEN.E.INILLA.ENEILTEQEELL.MEQFL.RQI.SEKEE....RLR | |
Retrocopy | CETKIAQEIASL*KEGVSKEEMNEN*EFINILLAWENEILTEQEELLTMEQFLGRQISSEKEETSEGRLR |
Parental | AEIAEIQSRQQHGRSETEEYSSESESESEDEEELQIILEDLQRQNEELEIKNNHLNQAIHEEREAIIELR |
.EIAEIQSRQQHG.SETEEYSSESE..SEDEEELQIILE.LQRQN.ELE.KNNHLNQAI.EE.E.I.EL. | |
Retrocopy | VEIAEIQSRQQHG*SETEEYSSESER*SEDEEELQIILEYLQRQNKELETKNNHLNQAIQEECEVIMELH |
Parental | VQLRLLQMQRAKAEQQAQEDQE---PEWRG-GAVQPPRDGVLELKAAKEQPKAGKEPAKPSPSRDRKETS |
VQL.LLQMQ..KAEQQ.QEDQE...P.WRG.GAVQ.PRDGVL..K.AK.QPKAGKE..KPSPSRDR.ETS | |
Retrocopy | VQLQLLQMQGPKAEQQVQEDQEDQEPRWRG<GAVQLPRDGVLWPKEAKRQPKAGKELVKPSPSRDRRETS |
Parental | I |
I | |
Retrocopy | I |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .11 RPM | 55 .24 RPM |
SRP007412_brain_prefrontal_cortex | 0 .08 RPM | 88 .85 RPM |
SRP007412_cerebellum | 0 .26 RPM | 44 .10 RPM |
SRP007412_heart | 0 .06 RPM | 39 .75 RPM |
SRP007412_kidney | 0 .47 RPM | 43 .78 RPM |
SRP007412_liver | 0 .00 RPM | 16 .86 RPM |
SRP007412_testis | 0 .08 RPM | 11 .50 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2734 |
Pan troglodytes | retro_ptro_1848 |
Gorilla gorilla | retro_ggor_1903 |
Pongo abelii | retro_pabe_2273 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Homo sapiens | ENSG00000017797 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000023120 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000019521 | 2 retrocopies |
retro_mmul_1000, retro_mmul_1528 ,
|
Nomascus leucogenys | ENSNLEG00000006950 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000009010 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000009859 | 2 retrocopies |