RetrogeneDB ID: | retro_mmul_1001 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 13:100451426..100451758(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ARPP19 | ||
Ensembl ID: | ENSMMUG00000008344 | ||
Aliases: | None | ||
Description: | cAMP-regulated phosphoprotein 19 [Source:RefSeq peptide;Acc:NP_001253378] |
Percent Identity: | 84.82 % |
Parental protein coverage: | 99.11 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MSAEVPEAASAEEQKEMEDKVTSPEKAEEAKLKARYPHLGQKPGGSDFLRKRLQKGQKYFDSG-DYNMAK |
MS.EV..AAS.E.QKEMED.V.SPEK.EEAKLKARYPHLGQ.P.GSDFLRKRLQKGQKYFDSG.DYNMAK | |
Retrocopy | MSVEVSGAASVEKQKEMEDTVNSPEKTEEAKLKARYPHLGQMPAGSDFLRKRLQKGQKYFDSG<DYNMAK |
Parental | AKMKNKQLPAAAPDKTEVTGDHIPTPQDLPQRKPSLVASKLA |
AKMKNKQLP.AA..KTEVTGDHIPTP.DL.Q.KPSLVASKLA | |
Retrocopy | AKMKNKQLPTAALEKTEVTGDHIPTPKDLAQWKPSLVASKLA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 83 .14 RPM |
SRP007412_brain_prefrontal_cortex | 0 .08 RPM | 100 .35 RPM |
SRP007412_cerebellum | 0 .06 RPM | 20 .92 RPM |
SRP007412_heart | 0 .00 RPM | 15 .37 RPM |
SRP007412_kidney | 0 .00 RPM | 21 .13 RPM |
SRP007412_liver | 0 .00 RPM | 3 .76 RPM |
SRP007412_testis | 0 .00 RPM | 111 .50 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dipodomys ordii | ENSDORG00000011321 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000025250 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000008344 | 1 retrocopy |
retro_mmul_1001 ,
|
Otolemur garnettii | ENSOGAG00000013865 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000006487 | 2 retrocopies | |
Pteropus vampyrus | ENSPVAG00000004012 | 1 retrocopy |