RetrogeneDB ID:

retro_pvam_205

Retrocopy
location
Organism:Megabat (Pteropus vampyrus)
Coordinates:GeneScaffold_1862:229869..230197(+)
Located in intron of:ENSPVAG00000010252
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:ARPP19
Ensembl ID:ENSPVAG00000004012
Aliases:None
Description:cAMP-regulated phosphoprotein, 19kDa [Source:HGNC Symbol;Acc:16967]


Retrocopy-Parental alignment summary:






>retro_pvam_205
ATGTCCGTGGAAGTCCCCGAGGCAGCCTCAGTACAGGAGCAGAAGGAAATGCAAGATAAAGTGACTAGAGAAAGCTGAAG
AAGCAAAATTAAAAGCAAGGTATCCTCATTTGGGACAAAAGCCTGGAGATTCAGATTTCTTACGGAAATGATTGCAGAAA
GGGCAAAAATATTTTAATTCTGGAGATTACAACATGGCTAAAGCAAAAATGAAGAGCAAGCAACTTCCTACTGCAGCCCC
GGAGAAGACAGGTCACCAGTGACCACATCCCCACTCCACGGGACCTTCCTCCGTGGAAGCCATCCCTGTTGCCAGCAAGC
TGGATGGC

ORF - retro_pvam_205 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 67.24 %
Parental protein coverage: 100. %
Number of stop codons detected: 2
Number of frameshifts detected 3


Retrocopy - Parental Gene Alignment:

ParentalMSAEVPEAASAEEQKEMED-KVTSPEKAEEAKLKARYPHLGQKPGGSDFLRKRLQKGQKYFDSGDYNMAK
MS.EVPEA..A..Q...E..K....EKAEEAKLKARYPHLGQKPG.SDFLRK.LQKGQKYF.SGDYNMA.
RetrocopyMSVEVPEA--ASVQEQKEM>KIK*LEKAEEAKLKARYPHLGQKPGDSDFLRK*LQKGQKYFNSGDYNMA-
ParentalAKMKNKQLPAAAA-PDKTEVTGDHIPTPQDLPQRKPSL-VASKLAG
.K.K.K......A.P....VT.DHIPTP.DLP..KPSL.VASKL.G
Retrocopy-KAKMKSKQLPTA>PRRRQVTSDHIPTPRDLPPWKPSL<VASKLDG

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Pteropus vampyrus was not studied using RNA-Seq expression data.
Pteropus vampyrus was not studied using ChIP-Seq data.
Pteropus vampyrus was not studied using EST data.
Pteropus vampyrus was not studied using FANTOM5 data.
retro_pvam_205 was not experimentally validated.

Retrocopy orthology:
Pteropus vampyrus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 6 parental genes, and 8 retrocopies.

Species Parental gene accession Retrocopies number
Dipodomys ordii ENSDORG000000113212 retrocopies
Gorilla gorilla ENSGGOG000000252501 retrocopy
Macaca mulatta ENSMMUG000000083441 retrocopy
Otolemur garnettii ENSOGAG000000138651 retrocopy
Pongo abelii ENSPPYG000000064872 retrocopies
Pteropus vampyrus ENSPVAG00000004012 1 retrocopy
retro_pvam_205 ,



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