>retro_mmul_1265
ATGTCGGTGGTGGGGCTGAAGAACCATTTCTACAAGGCAAGCCAGCTGGTCAGTGAGAAGGTGGGAGGGGCTGAGGGGAC
CAAGCTGGATGATGACTTCAAAGAGATGGAGAAGAAGGTGGATGTCACCAGCAAGGCAGTGACGGAAGTGCTGGCCAGGA
CCATCAAGTACCTGTAGCCCAACCCAAACCTCGCAGGTAAGCTGACCATGCTCAACATGGTGTCCGAGATCCGGGGCCAG
GTGAAGAACCCCAGCTATCTGCAGTTGGAGGGGCTCCTGAGCGAGTGCCTGATCTGCCACCTGAAGGAGCTGGGCGGTGA
GTCCAACTTCGGTGACACACTGCTGGATGTCGGCGAGTCCATGAAGCACCTGGTGGAGGTGAAGGACTCCCTGGACATAG
AGGTCAAACAGAACTTCATTGACCCCCTCCAGAACCTGTGCGAGAACAACCTGAAGGAGATCCAGCACCACCAGTTGGAG
GGCCGCCGCCTGGACTTTAACTAAAAGAAG
ORF - retro_mmul_1265 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
63.37 % |
Parental protein coverage: |
59.72 % |
Number of stop codons detected: |
2 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | MSVAGLKKQFHKASQLFSEKISGAEGTKLDDEFLDMERKIDVTNKAVAEILSKTTEYLQPNPAYRAKLGM |
| MSV.GLK..F.KASQL.SEK..GAEGTKLDD.F..ME.K.DVT.KAV.E.L..T..YL.PNP....KL.M |
Retrocopy | MSVVGLKNHFYKASQLVSEKVGGAEGTKLDDDFKEMEKKVDVTSKAVTEVLARTIKYL*PNPNLAGKLTM |
|
Parental | LNTVSKIRGQVKATGYPQTEGLLGDCMLKYGKELGEDSTFGNALIEVGESMKLMAEVKDSLDINVKQTFI |
| LN.VS.IRGQVK...Y.Q.EGLL..C.....KELG..S.FG..L..VGESMK...EVKDSLDI.VKQ.FI |
Retrocopy | LNMVSEIRGQVKNPSYLQLEGLLSECLICHLKELGGESNFGDTLLDVGESMKHLVEVKDSLDIEVKQNFI |
|
Parental | DPLQLLQDKDLKEIGHHLKKLEGRRLDYDYKK |
| DPLQ.L....LKEI.HH...LEGRRLD...KK |
Retrocopy | DPLQNLCENNLKEIQHH--QLEGRRLDFN*KK |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP007412_brain |
0 .34 RPM |
44 .48 RPM |
SRP007412_brain_prefrontal_cortex |
0 .32 RPM |
36 .89 RPM |
SRP007412_cerebellum |
0 .45 RPM |
22 .41 RPM |
SRP007412_heart |
0 .12 RPM |
0 .29 RPM |
SRP007412_kidney |
0 .23 RPM |
0 .35 RPM |
SRP007412_liver |
0 .55 RPM |
0 .04 RPM |
SRP007412_testis |
2 .07 RPM |
122 .39 RPM |
Macaca mulatta was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mmul_1265 retrocopy.
Macaca mulatta was not studied using FANTOM5 data.
retro_mmul_1265 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_mmul_1265 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
3 parental genes, and
3 retrocopies.