RetrogeneDB ID: | retro_mmul_1436 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 2:68428662..68429172(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | C8orf33 | ||
Ensembl ID: | ENSMMUG00000016084 | ||
Aliases: | None | ||
Description: | chromosome 8 open reading frame 33 [Source:HGNC Symbol;Acc:26104] |
Percent Identity: | 81.29 % |
Parental protein coverage: | 74.35 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 0 |
Parental | LGDEGSAASKKQKNKKKTRNRASVANGGEKASEKPAPEEVPLSAEAQARAGLAQELAWCVEQLELGLKRQ |
L.DEGSAASK.QKNKKKTRN.ASVANGG..ASEKPAPEEVPL.AEAQ....LAQELA.CVEQLELG.KRQ | |
Retrocopy | LDDEGSAASKIQKNKKKTRNTASVANGG*NASEKPAPEEVPLRAEAQVQQ-LAQELA*CVEQLELGHKRQ |
Parental | KPTPKQKEQAIGAIRTLRSKRTPLPRKRQLMHSLFGDYRAQMEAEWREALRALRSAAYLAQVQPVDGATR |
KPT..Q.EQ.IGAI.TLRSKRT.LPRKRQLM.SLFGDYRAQ.EAEW.E.LRA.R.AAY.AQV.PVDGATR | |
Retrocopy | KPTLTQEEQVIGAIQTLRSKRTSLPRKRQLMPSLFGDYRAQIEAEWCEGLRAHRAAAYSAQV*PVDGATR |
Parental | KKSRRVCRPRPIGRAKATLDTPDEEFRFNFF |
.KS.RVCRPRP..RAKATLDT.DEEFRF.FF | |
Retrocopy | NKSQRVCRPRPLWRAKATLDTHDEEFRFSFF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 4 .03 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 10 .87 RPM |
SRP007412_cerebellum | 0 .00 RPM | 4 .97 RPM |
SRP007412_heart | 0 .00 RPM | 5 .42 RPM |
SRP007412_kidney | 0 .00 RPM | 5 .87 RPM |
SRP007412_liver | 0 .00 RPM | 4 .08 RPM |
SRP007412_testis | 0 .00 RPM | 7 .92 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000015805 | 3 retrocopies | |
Macaca mulatta | ENSMMUG00000016084 | 1 retrocopy |
retro_mmul_1436 ,
|
Monodelphis domestica | ENSMODG00000028791 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000005972 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000034107 | 1 retrocopy |