>retro_mmul_1605
ATGACTCTGGAGTCCGTGATGGCGCGTTGCCTGAGCGATGAGGTGAAGGAGCGGATCAACGCCGAGATCCAGAAGCAGCT
GCAGGGGACAAGCGCGACGCCCGGCGCCAGCTCAAGCTGCTACTGCTCCGCAGGGGCGAGAGCGGGAAGAGCATCTTCAT
CAAACAGACGCGCATCGTCCAGGGCGCCTGCTACTCGCAGGAGGCCAAGCGCGGCTTCACCAAGCTCGTCTACCACATCT
TCACCGCCACCCAGGCCACGATCCGGGCCGTGGAGATGCTGAACATCCTCCACAAGGAGGAGCAGAACAAGGCCAGTGGC
TCCTGATCCGAGAGGTGGACGCAGAGAAGGTGACCACCTTCGAGCATTGGTACGTCAGCGCCATCAGGACCCTGTGGGAC
GACCCCGGCATCCAGGAGTGCTGCGACCGCAGGCGCCAGTACCAGCTCTCGGACCCGGCCAAGTACTGCCTGACGGACGC
TGCCCGCAGGGCCGCCTCGGGCCACGTGCCCACCCCGCAGGACGCGCTGCGGGGCCGCGTGCCCACCACCGGCATC
ORF - retro_mmul_1605 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
75.39 % |
Parental protein coverage: |
52.65 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
2 |
Retrocopy - Parental Gene Alignment:
Parental | MTLESMMACCLSDEVKESKRINAEIEKQLRR-DKRDARRELKLLLLGTGESGKSTFIKQMRIIHGAGYSE |
| MTLES.MA.CLSDEVKE..RINAEI.KQL...DKRDARR.LKLLLL..GESGKS.FIKQ.RI..GA.YS. |
Retrocopy | MTLESVMARCLSDEVKE--RINAEIQKQLQG<DKRDARRQLKLLLLRRGESGKSIFIKQTRIVQGACYSQ |
|
Parental | EDKRSFTKLVYQNIFTAMQAMIRAMETLKILYKYEQNKANA-LLIREVDVEKVTTFEHQYVSAIKTLWDD |
| E.KR.FTKLVY..IFTA.QA.IRA.E.L.IL.K.EQNKA...LLIREVD.EKVTTFEH.YVSAI.TLWDD |
Retrocopy | EAKRGFTKLVY-HIFTATQATIRAVEMLNILHKEEQNKASG<LLIREVDAEKVTTFEHWYVSAIRTLWDD |
|
Parental | PGIQECYDRRREYQLSDSAKYYLTDVDRIATSGYLPTQQDVLRVRVPTTGI |
| PGIQEC.DRRR.YQLSD.AKY.LTD..R.A.SG..PT.QD.LR.RVPTTGI |
Retrocopy | PGIQECCDRRRQYQLSDPAKYCLTDAARRAASGHVPTPQDALRGRVPTTGI |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP007412_brain |
0 .00 RPM |
18 .26 RPM |
SRP007412_brain_prefrontal_cortex |
0 .79 RPM |
43 .31 RPM |
SRP007412_cerebellum |
0 .00 RPM |
23 .44 RPM |
SRP007412_heart |
0 .00 RPM |
19 .49 RPM |
SRP007412_kidney |
0 .00 RPM |
29 .22 RPM |
SRP007412_liver |
0 .08 RPM |
23 .20 RPM |
SRP007412_testis |
0 .08 RPM |
95 .78 RPM |
Macaca mulatta was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mmul_1605 retrocopy.
Macaca mulatta was not studied using FANTOM5 data.
retro_mmul_1605 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_mmul_1605 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
4 parental genes, and
6 retrocopies.