RetrogeneDB ID: | retro_mmul_1694 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 3:82879126..82879792(-) | ||
Located in intron of: | ENSMMUG00000019015 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MDP1 | ||
Ensembl ID: | ENSMMUG00000012476 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 98.65 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MSGLGRLFGKGKKEKGPTPEEAIQKLKETEKILIKKQEFLEQKIQQELQTAKKYGTKNKRAALQALRRKK |
MSGLGRLFGKGKKEKGPTPEEAIQKLKETEK.LIKKQEFLEQKIQQELQTAKKYGTKNKRAALQALRRKK | |
Retrocopy | MSGLGRLFGKGKKEKGPTPEEAIQKLKETEKVLIKKQEFLEQKIQQELQTAKKYGTKNKRAALQALRRKK |
Parental | RFEQQLAQTDGTLSTLEFQREAIENATTNAEVLRTMELAAQGMKKAYQDMDIDKVDELMTDITEQQEVAQ |
RFEQQLAQTDGTLSTLEFQREAIENATTNAEVLRTMELAAQGMKKAYQDMDIDKVDELMTDI.EQQEVAQ | |
Retrocopy | RFEQQLAQTDGTLSTLEFQREAIENATTNAEVLRTMELAAQGMKKAYQDMDIDKVDELMTDIIEQQEVAQ |
Parental | QISDAISRPMGFGDDVDEDELLEELELLEQEELAQELLSVGDKEEEPPVKLPSVPSTHLPAEPAPKADED |
QISDAISRPMGFGDDVDEDELLEELELLEQEELAQELLSVGDKEEEPPVKLP.VPSTHLPAEPAPKADED | |
Retrocopy | QISDAISRPMGFGDDVDEDELLEELELLEQEELAQELLSVGDKEEEPPVKLPGVPSTHLPAEPAPKADED |
Parental | EEALKQLAEWVS |
EEALKQLAEWVS | |
Retrocopy | EEALKQLAEWVS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 12 .55 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 23 .09 RPM |
SRP007412_cerebellum | 0 .06 RPM | 21 .96 RPM |
SRP007412_heart | 0 .06 RPM | 17 .43 RPM |
SRP007412_kidney | 0 .82 RPM | 19 .95 RPM |
SRP007412_liver | 0 .00 RPM | 10 .29 RPM |
SRP007412_testis | 0 .08 RPM | 14 .14 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Homo sapiens | ENSG00000254505 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000016091 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000001732 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000008084 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000012476 | 2 retrocopies |
retro_mmul_1035, retro_mmul_1694 ,
|
Pongo abelii | ENSPPYG00000005691 | 1 retrocopy | |
Sorex araneus | ENSSARG00000008328 | 1 retrocopy |