RetrogeneDB ID: | retro_hsap_2284 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 2:81645738..81646342(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000231722 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CHMP4A | ||
Ensembl ID: | ENSG00000254505 | ||
Aliases: | CHMP4A, C14orf123, CHMP4, CHMP4B, HSPC134, SHAX2, SNF7, SNF7-1, VPS32-1, VPS32A | ||
Description: | charged multivesicular body protein 4A [Source:HGNC Symbol;Acc:20274] |
Percent Identity: | 59.13 % |
Parental protein coverage: | 76.6 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | EEAIQKLKETEKILIKKQEFLEQKIQQELQTAKKYGTKNKRAALQALRRKKRFEQQLAQTDGTLSTLEFQ |
EE...K..E.....I....F.......E....K..G.KNKRAALQAL..KKR.EQQLAQTD.T.STLEFQ | |
Retrocopy | EEMVIKKQEFLEQTIQHELFISSI---ENRLSKNHGSKNKRAALQALQGKKRWEQQLAQTDRTSSTLEFQ |
Parental | REAIENATTNAEVLRTMELAA-QSMKKAYQDMDIDKVDELMTDITEQQEVAQQISDAISRPMGFGDDVDE |
.E.IENATTNA....T..LAA......AYQD.DI.KVDELM.DITE.QEVAQQISDAIS.P.GF..DV.. | |
Retrocopy | HEVIENATTNAKMFCTL*LAA>EAWLAAYQDLDIGKVDELMDDITE*QEVAQQISDAIS*PVGFEEDVGD |
Parental | DELLEELEELEQEELAQELLNV-GDKEEEPSVKLPSVPST--HLPAGPAPKVDEDEEALKQ-LAEWVS |
.ELLEELE.LE.EELAQELLNV.G.KEE.......SV.ST......G.APK.DED.EA.K...A.W.S | |
Retrocopy | HELLEELEKLE-EELAQELLNV>GNKEEVNPSQMASVSSTLSAFLGGSAPKADEDKEAQKE<VAAWES |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 1 .01 RPM |
bodymap2_adrenal | 0 .00 RPM | 5 .85 RPM |
bodymap2_brain | 0 .00 RPM | 1 .55 RPM |
bodymap2_breast | 0 .00 RPM | 2 .12 RPM |
bodymap2_colon | 0 .00 RPM | 1 .78 RPM |
bodymap2_heart | 0 .00 RPM | 0 .41 RPM |
bodymap2_kidney | 0 .00 RPM | 1 .65 RPM |
bodymap2_liver | 0 .00 RPM | 0 .57 RPM |
bodymap2_lung | 0 .00 RPM | 1 .53 RPM |
bodymap2_lymph_node | 0 .00 RPM | 4 .28 RPM |
bodymap2_ovary | 0 .00 RPM | 2 .31 RPM |
bodymap2_prostate | 0 .00 RPM | 0 .87 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 0 .36 RPM |
bodymap2_testis | 0 .00 RPM | 1 .32 RPM |
bodymap2_thyroid | 0 .00 RPM | 2 .79 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 1 .32 RPM |
Species | RetrogeneDB ID |
---|---|
Gorilla gorilla | retro_ggor_1697 |
Pongo abelii | retro_pabe_1937 |
Macaca mulatta | retro_mmul_1035 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Homo sapiens | ENSG00000101421 | 1 retrocopy | |
Homo sapiens | ENSG00000254505 | 1 retrocopy |
retro_hsap_2284 ,
|
Gorilla gorilla | ENSGGOG00000016091 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000001732 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000012476 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000005691 | 1 retrocopy | |
Sorex araneus | ENSSARG00000008328 | 1 retrocopy |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |